Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0001s2570 [ SapurV1A.0001s2570] |
chr06 | 5770602 | 5773928 | v1 | Salix purpurea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0001s2570.1 SapurV1A.0001s2570.1 |
High | No | 2274 | OG0021692 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -24.798 AMFE: -0.682 GC content %: 36.368 | |
Spurpurea_SapurV1A.0001s2570.2 SapurV1A.0001s2570.2 |
High | No | 864 | OG0021692 | Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -23.206 AMFE: -0.571 GC content %: 40.625 | |
Spurpurea_SapurV1A.0001s2570.3 SapurV1A.0001s2570.3 |
High | No | 786 | OG0021692 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -22.532 AMFE: -0.552 GC content %: 40.840 |