Spurpurea SapurV1A.0001s2570

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Spurpurea_SapurV1A.0001s2570
[ SapurV1A.0001s2570]
chr06 5770602 5773928 v1 Salix purpurea (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Spurpurea_SapurV1A.0001s2570.1
SapurV1A.0001s2570.1
High No 2274 OG0021692
Coding potential...
Type: noncoding Potential: -0.853
Folding energies...
MFEI: -24.798 AMFE: -0.682
GC content
%: 36.368
Spurpurea_SapurV1A.0001s2570.2
SapurV1A.0001s2570.2
High No 864 OG0021692
Coding potential...
Type: noncoding Potential: -0.794
Folding energies...
MFEI: -23.206 AMFE: -0.571
GC content
%: 40.625
Spurpurea_SapurV1A.0001s2570.3
SapurV1A.0001s2570.3
High No 786 OG0021692
Coding potential...
Type: noncoding Potential: -0.839
Folding energies...
MFEI: -22.532 AMFE: -0.552
GC content
%: 40.840


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Spurpurea_SapurV1A.0001s2570.png