GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Spurpurea_SapurV1A.0009s1090 [ SapurV1A.0009s1090]	chr03	15313334	15316059	v1	Salix purpurea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Spurpurea_SapurV1A.0009s1090.1 SapurV1A.0009s1090.1	High	No	1243	OG0058255		Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -25.889 AMFE: -0.645 GC content %: 40.145
Spurpurea_SapurV1A.0009s1090.2 SapurV1A.0009s1090.2	High	No	1409	OG0058255		Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -24.344 AMFE: -0.598 GC content %: 40.738

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).