GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Spurpurea_SapurV1A.0039s0360 [ SapurV1A.0039s0360]	chr07	11637090	11641715	v1	Salix purpurea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Spurpurea_SapurV1A.0039s0360.1 SapurV1A.0039s0360.1	High	No	934	OG0021698		Get ORF Coding potential... Type: noncoding Potential: -0.418 Folding energies... MFEI: -24.968 AMFE: -0.634 GC content %: 39.400
Spurpurea_SapurV1A.0039s0360.2 SapurV1A.0039s0360.2	High	No	487	OG0021698		Get ORF Coding potential... Type: noncoding Potential: -0.235 Folding energies... MFEI: -29.281 AMFE: -0.676 GC content %: 43.326
Spurpurea_SapurV1A.0039s0360.3 SapurV1A.0039s0360.3	High	No	830	OG0021698		Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -24.675 AMFE: -0.619 GC content %: 39.880

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).