Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0105s0350 [ SapurV1A.0105s0350] |
Scaffold0105 | 369824 | 370795 | v1 | Salix purpurea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0105s0350.1 SapurV1A.0105s0350.1 |
Low | No | 552 | OG0319607 | Get ORF Coding potential... Type: coding Potential: 0.265 Folding energies... MFEI: -28.750 AMFE: -0.661 GC content %: 43.478 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Spurpurea_SapurV1A.0105s0350.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao |