GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Spurpurea_SapurV1A.0108s0100 [ SapurV1A.0108s0100]	chr06	13438779	13442057	v1	Salix purpurea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Spurpurea_SapurV1A.0108s0100.1 SapurV1A.0108s0100.1	High	No	845	OG0058327		Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -27.846 AMFE: -0.682 GC content %: 40.828
Spurpurea_SapurV1A.0108s0100.2 SapurV1A.0108s0100.2	High	No	751	OG0058327		Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -27.537 AMFE: -0.678 GC content %: 40.613

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).