Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0342s0210 [ SapurV1A.0342s0210] |
Scaffold0342 | 240531 | 241546 | v1 | Salix purpurea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0342s0210.1 SapurV1A.0342s0210.1 |
High | No | 914 | OG0021728 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -26.477 AMFE: -0.625 GC content %: 42.341 | |
Spurpurea_SapurV1A.0342s0210.2 SapurV1A.0342s0210.2 |
High | No | 810 | OG0021728 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -26.444 AMFE: -0.616 GC content %: 42.963 | |
Spurpurea_SapurV1A.0342s0210.3 SapurV1A.0342s0210.3 |
High | No | 712 | OG0021728 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -27.261 AMFE: -0.618 GC content %: 44.101 |