Spurpurea SapurV1A.0690s0180
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Spurpurea_SapurV1A.0690s0180 [ SapurV1A.0690s0180] |
chr13 | 13319108 | 13320778 | v1 | Salix purpurea (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Spurpurea_SapurV1A.0690s0180.1 SapurV1A.0690s0180.1 |
High | No | 892 | OG0003497 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -24.406 AMFE: -0.598 GC content %: 40.807 | |
| Spurpurea_SapurV1A.0690s0180.2 SapurV1A.0690s0180.2 |
High | No | 679 | OG0003497 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -23.976 AMFE: -0.569 GC content %: 42.121 | |
| Spurpurea_SapurV1A.0690s0180.3 SapurV1A.0690s0180.3 |
High | No | 915 | OG0003497 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -24.710 AMFE: -0.605 GC content %: 40.874 | |
| Spurpurea_SapurV1A.0690s0180.4 SapurV1A.0690s0180.4 |
High | No | 699 | OG0003497 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -24.564 AMFE: -0.580 GC content %: 42.346 | |
| Spurpurea_SapurV1A.0690s0180.5 SapurV1A.0690s0180.5 |
High | No | 985 | OG0003497 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -23.766 AMFE: -0.600 GC content %: 39.594 | |
| Spurpurea_SapurV1A.0690s0180.6 SapurV1A.0690s0180.6 |
High | No | 1201 | OG0003497 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -24.122 AMFE: -0.619 GC content %: 38.968 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
