GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Spurpurea_SapurV1A.0845s0060 [ SapurV1A.0845s0060]	chr02	9717800	9719664	v1	Salix purpurea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Spurpurea_SapurV1A.0845s0060.1 SapurV1A.0845s0060.1	High	No	1489	OG0014446		Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -25.870 AMFE: -0.651 GC content %: 39.758
Spurpurea_SapurV1A.0845s0060.2 SapurV1A.0845s0060.2	High	No	1443	OG0014446		Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -26.812 AMFE: -0.657 GC content %: 40.818
Spurpurea_SapurV1A.0845s0060.3 SapurV1A.0845s0060.3	High	No	1421	OG0014446		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -26.552 AMFE: -0.654 GC content %: 40.605
Spurpurea_SapurV1A.0845s0060.4 SapurV1A.0845s0060.4	High	No	1467	OG0014446		Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -25.603 AMFE: -0.648 GC content %: 39.536

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).