GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Spurpurea_SapurV1A.1162s0050 [ SapurV1A.1162s0050]	Scaffold1162	20688	21838	v1	Salix purpurea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Spurpurea_SapurV1A.1162s0050.1 SapurV1A.1162s0050.1	High	No	786	OG0009135		Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -24.784 AMFE: -0.628 GC content %: 39.440
Spurpurea_SapurV1A.1162s0050.2 SapurV1A.1162s0050.2	High	No	501	OG0009135		Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -24.950 AMFE: -0.601 GC content %: 41.517
Spurpurea_SapurV1A.1162s0050.3 SapurV1A.1162s0050.3	High	No	815	OG0009135		Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -24.798 AMFE: -0.634 GC content %: 39.141

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).