Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.5009s0010 [ SapurV1A.5009s0010] |
Scaffold5009 | 5 | 2607 | v1 | Salix purpurea (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.5009s0010.1 SapurV1A.5009s0010.1 |
High | No | 537 | OG0006427 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -26.723 AMFE: -0.598 GC content %: 44.693 | |
Spurpurea_SapurV1A.5009s0010.2 SapurV1A.5009s0010.2 |
Low | No | 365 | OG0006427 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -25.890 AMFE: -0.573 GC content %: 45.205 | |
Spurpurea_SapurV1A.5009s0010.4 SapurV1A.5009s0010.4 |
High | No | 624 | OG0006427 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -26.186 AMFE: -0.610 GC content %: 42.949 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Spurpurea_SapurV1A.5009s0010.2 | SwissProt | 2021-04-01 | Q8CGC6 | 8.41e-4 |