Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400012618 [ PGSC0003DMG400012618] |
ST4.03ch02 | 47591484 | 47594309 | v4.03 | Solanum tuberosum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400032850 PGSC0003DMT400032850 |
Low | No | 222 | OG0334207 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -18.333 AMFE: -0.447 GC content %: 40.991 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400032850 | SwissProt | 2021-04-01 | Q9LU68 | 9.8e-14 |