Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400017952 [ PGSC0003DMG400017952] |
ST4.03ch02 | 7279612 | 7279959 | v4.03 | Solanum tuberosum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400046246 PGSC0003DMT400046246 |
Low | No | 348 | OG0334922 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -28.534 AMFE: -0.690 GC content %: 41.379 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400046246 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |