Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400026983 [ PGSC0003DMG400026983] |
ST4.03ch06 | 52673325 | 52682279 | v4.03 | Solanum tuberosum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400069387 PGSC0003DMT400069387 |
Low | No | 216 | OG0336196 | Get ORF Coding potential... Type: noncoding Potential: -0.386 Folding energies... MFEI: -25.648 AMFE: -0.554 GC content %: 46.296 | |
Stuberosum_PGSC0003DMT400069390 PGSC0003DMT400069390 |
Low | No | 216 | OG0336197 | Get ORF Coding potential... Type: noncoding Potential: -0.363 Folding energies... MFEI: -28.287 AMFE: -0.611 GC content %: 46.296 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400069390 | SwissProt | 2021-04-01 | Q93VI3 | 2.42e-41 |
Stuberosum_PGSC0003DMT400069387 | SwissProt | 2021-04-01 | Q93VI3 | 9.16e-41 |