GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Sviridis_Sevir.2G106400 [ Sevir.2G106400]	Chr_02	9878841	9880738	v2.1	Setaria viridis (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Sviridis_Sevir.2G106400.2 Sevir.2G106400.2	High	No	1413	OG0058666		Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -33.206 AMFE: -0.706 GC content %: 47.063
Sviridis_Sevir.2G106400.3 Sevir.2G106400.3	High	No	1053	OG0058666		Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -32.830 AMFE: -0.690 GC content %: 47.578

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).