GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Sviridis_Sevir.6G092450 [ Sevir.6G092450]	Chr_06	9204450	9205123	v2.1	Setaria viridis (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Sviridis_Sevir.6G092450.1 Sevir.6G092450.1	High	No	584	OG0021826		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -30.668 AMFE: -0.618 GC content %: 49.658
Sviridis_Sevir.6G092450.2 Sevir.6G092450.2	High	No	566	OG0021826		Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -30.530 AMFE: -0.617 GC content %: 49.470
Sviridis_Sevir.6G092450.3 Sevir.6G092450.3	High	No	518	OG0021826		Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -30.019 AMFE: -0.620 GC content %: 48.456

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).