GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Sviridis_Sevir.7G020200 [ Sevir.7G020200]	Chr_07	10003341	10004202	v2.1	Setaria viridis (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Sviridis_Sevir.7G020200.1 Sevir.7G020200.1	High	No	559	OG0021829		Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -29.499 AMFE: -0.702 GC content %: 42.039
Sviridis_Sevir.7G020200.2 Sevir.7G020200.2	High	No	757	OG0021829		Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -27.966 AMFE: -0.692 GC content %: 40.423
Sviridis_Sevir.7G020200.3 Sevir.7G020200.3	High	No	744	OG0021829		Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -27.984 AMFE: -0.689 GC content %: 40.591

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).