GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Sviridis_Sevir.7G328333 [ Sevir.7G328333]	Chr_07	34520001	34522016	v2.1	Setaria viridis (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Sviridis_Sevir.7G328333.1 Sevir.7G328333.1	High	No	1040	OG0058816		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -29.894 AMFE: -0.633 GC content %: 47.212
Sviridis_Sevir.7G328333.2 Sevir.7G328333.2	High	No	1075	OG0058816		Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -30.037 AMFE: -0.638 GC content %: 47.070

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).