GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Sviridis_Sevir.8G090600 [ Sevir.8G090600]	Chr_08	10481026	10488474	v2.1	Setaria viridis (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Sviridis_Sevir.8G090600.3 Sevir.8G090600.3	High	No	2722	OG0058824		Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -32.105 AMFE: -0.675 GC content %: 47.539
Sviridis_Sevir.8G090600.4 Sevir.8G090600.4	High	No	2624	OG0058824		Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -31.726 AMFE: -0.664 GC content %: 47.752

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).