Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1AG001070 [ TRIDC1AG001070] |
1A | 6121437 | 6132068 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1AG001070.10 TRIDC1AG001070.10 |
Low | No | 1206 | OG0015138 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -27.620 AMFE: -0.632 GC content %: 43.698 | |
Tdicoccoides_TRIDC1AG001070.5 TRIDC1AG001070.5 |
Low | No | 1984 | OG0015138 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -28.281 AMFE: -0.630 GC content %: 44.859 | |
Tdicoccoides_TRIDC1AG001070.7 TRIDC1AG001070.7 |
Low | No | 1545 | OG0015138 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -28.337 AMFE: -0.663 GC content %: 42.718 | |
Tdicoccoides_TRIDC1AG001070.8 TRIDC1AG001070.8 |
Low | No | 1534 | OG0015138 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -28.227 AMFE: -0.656 GC content %: 43.025 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC1AG001070.8 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Tdicoccoides_TRIDC1AG001070.5 | SwissProt | 2021-04-01 | P42347 | 3.78e-7 |
Tdicoccoides_TRIDC1AG001070.10 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Tdicoccoides_TRIDC1AG001070.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Tdicoccoides_TRIDC1AG001070.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |