Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1AG001130 [ TRIDC1AG001130] |
1A | 6236198 | 6238048 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1AG001130.2 TRIDC1AG001130.2 |
Low | No | 827 | OG0022762 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -32.092 AMFE: -0.644 GC content %: 49.819 | |
Tdicoccoides_TRIDC1AG001130.4 TRIDC1AG001130.4 |
Low | No | 815 | OG0022762 | Get ORF Coding potential... Type: noncoding Potential: -0.026 Folding energies... MFEI: -31.313 AMFE: -0.641 GC content %: 48.834 | |
Tdicoccoides_TRIDC1AG001130.6 TRIDC1AG001130.6 |
Low | No | 763 | OG0022762 | Get ORF Coding potential... Type: noncoding Potential: -0.012 Folding energies... MFEI: -30.970 AMFE: -0.642 GC content %: 48.231 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC1AG001130.2 | SwissProt | 2021-04-01 | P27527 | 3.18e-35 |
Tdicoccoides_TRIDC1AG001130.4 | SwissProt | 2021-04-01 | P27527 | 9.55e-35 |
Tdicoccoides_TRIDC1AG001130.6 | SwissProt | 2021-04-01 | P27527 | 4.89e-35 |