GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1AG007570 [ TRIDC1AG007570]	1A	38468148	38477222	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1AG007570.1 TRIDC1AG007570.1	High	No	2240	OG0061118		Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -29.415 AMFE: -0.660 GC content %: 44.598
Tdicoccoides_TRIDC1AG007570.11 TRIDC1AG007570.11	High	No	573	OG0352926		Get ORF Coding potential... Type: noncoding Potential: -1.386 Folding energies... MFEI: -29.058 AMFE: -0.671 GC content %: 43.281
Tdicoccoides_TRIDC1AG007570.2 TRIDC1AG007570.2	High	No	1121	OG0352927		Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -25.575 AMFE: -0.630 GC content %: 40.589
Tdicoccoides_TRIDC1AG007570.3 TRIDC1AG007570.3	High	No	611	OG0061118		Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -28.183 AMFE: -0.576 GC content %: 48.936

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).