GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1AG010880 [ TRIDC1AG010880]	1A	62814859	62819137	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1AG010880.4 TRIDC1AG010880.4	High	No	1094	OG0352974		Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -30.366 AMFE: -0.622 GC content %: 48.812
Tdicoccoides_TRIDC1AG010880.5 TRIDC1AG010880.5	Low	No	606	OG0352975		Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -33.828 AMFE: -0.573 GC content %: 59.076

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC1AG010880.5	SwissProt	2021-04-01	Q7XGU4	2.69e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).