Tdicoccoides TRIDC1AG012890
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG012890 [ TRIDC1AG012890] |
1A | 82923584 | 82926302 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG012890.1 TRIDC1AG012890.1 |
Low | No | 2071 | OG0001813 | Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -31.120 AMFE: -0.695 GC content %: 44.761 | |
| Tdicoccoides_TRIDC1AG012890.2 TRIDC1AG012890.2 |
Low | No | 1298 | OG0001813 | Get ORF Coding potential... Type: noncoding Potential: -0.143 Folding energies... MFEI: -34.183 AMFE: -0.690 GC content %: 49.538 | |
| Tdicoccoides_TRIDC1AG012890.3 TRIDC1AG012890.3 |
Low | No | 1582 | OG0001813 | Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -31.561 AMFE: -0.660 GC content %: 47.788 | |
| Tdicoccoides_TRIDC1AG012890.4 TRIDC1AG012890.4 |
Low | No | 1839 | OG0001813 | Get ORF Coding potential... Type: noncoding Potential: -0.184 Folding energies... MFEI: -32.512 AMFE: -0.704 GC content %: 46.166 | |
| Tdicoccoides_TRIDC1AG012890.5 TRIDC1AG012890.5 |
Low | No | 2423 | OG0001813 | Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -30.825 AMFE: -0.699 GC content %: 44.078 | |
| Tdicoccoides_TRIDC1AG012890.6 TRIDC1AG012890.6 |
Low | No | 2196 | OG0001813 | Get ORF Coding potential... Type: noncoding Potential: -0.203 Folding energies... MFEI: -31.790 AMFE: -0.702 GC content %: 45.264 | |
| Tdicoccoides_TRIDC1AG012890.7 TRIDC1AG012890.7 |
Low | No | 1362 | OG0001813 | Get ORF Coding potential... Type: noncoding Potential: -0.152 Folding energies... MFEI: -33.465 AMFE: -0.665 GC content %: 50.294 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG012890.2 | SwissProt | 2021-04-01 | Q10FF9 | 4.56e-24 |
| Tdicoccoides_TRIDC1AG012890.3 | SwissProt | 2021-04-01 | Q10FF9 | 9.22e-24 |
| Tdicoccoides_TRIDC1AG012890.4 | SwissProt | 2021-04-01 | Q10FF9 | 1.27e-23 |
| Tdicoccoides_TRIDC1AG012890.5 | SwissProt | 2021-04-01 | Q10FF9 | 1.81e-23 |
| Tdicoccoides_TRIDC1AG012890.6 | SwissProt | 2021-04-01 | Q10FF9 | 1.62e-23 |
| Tdicoccoides_TRIDC1AG012890.1 | SwissProt | 2021-04-01 | Q10FF9 | 1.5e-23 |
| Tdicoccoides_TRIDC1AG012890.7 | SwissProt | 2021-04-01 | Q10FF9 | 5.61e-24 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
