Tdicoccoides TRIDC1AG016100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG016100 [ TRIDC1AG016100] |
1A | 125751657 | 125755737 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG016100.1 TRIDC1AG016100.1 |
Low | No | 3797 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.679 Folding energies... MFEI: -28.815 AMFE: -0.656 GC content %: 43.956 | |
| Tdicoccoides_TRIDC1AG016100.10 TRIDC1AG016100.10 |
Low | No | 2382 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -28.682 AMFE: -0.652 GC content %: 43.997 | |
| Tdicoccoides_TRIDC1AG016100.11 TRIDC1AG016100.11 |
Low | No | 1884 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -30.005 AMFE: -0.661 GC content %: 45.382 | |
| Tdicoccoides_TRIDC1AG016100.12 TRIDC1AG016100.12 |
Low | No | 1947 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -29.563 AMFE: -0.669 GC content %: 44.222 | |
| Tdicoccoides_TRIDC1AG016100.13 TRIDC1AG016100.13 |
High | No | 1843 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -27.016 AMFE: -0.644 GC content %: 41.942 | |
| Tdicoccoides_TRIDC1AG016100.14 TRIDC1AG016100.14 |
Low | No | 1152 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -27.995 AMFE: -0.669 GC content %: 41.840 | |
| Tdicoccoides_TRIDC1AG016100.15 TRIDC1AG016100.15 |
Low | No | 1492 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -28.224 AMFE: -0.660 GC content %: 42.761 | |
| Tdicoccoides_TRIDC1AG016100.16 TRIDC1AG016100.16 |
Low | No | 1722 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -27.840 AMFE: -0.663 GC content %: 41.986 | |
| Tdicoccoides_TRIDC1AG016100.17 TRIDC1AG016100.17 |
Low | No | 920 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -27.500 AMFE: -0.622 GC content %: 44.239 | |
| Tdicoccoides_TRIDC1AG016100.18 TRIDC1AG016100.18 |
Low | No | 934 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -1.395 Folding energies... MFEI: -28.340 AMFE: -0.655 GC content %: 43.255 | |
| Tdicoccoides_TRIDC1AG016100.19 TRIDC1AG016100.19 |
Low | No | 1129 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -1.402 Folding energies... MFEI: -27.015 AMFE: -0.648 GC content %: 41.718 | |
| Tdicoccoides_TRIDC1AG016100.2 TRIDC1AG016100.2 |
Low | No | 2846 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.655 Folding energies... MFEI: -30.432 AMFE: -0.649 GC content %: 46.908 | |
| Tdicoccoides_TRIDC1AG016100.3 TRIDC1AG016100.3 |
Low | No | 3388 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -27.919 AMFE: -0.642 GC content %: 43.477 | |
| Tdicoccoides_TRIDC1AG016100.4 TRIDC1AG016100.4 |
Low | No | 2900 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -28.103 AMFE: -0.635 GC content %: 44.276 | |
| Tdicoccoides_TRIDC1AG016100.5 TRIDC1AG016100.5 |
Low | No | 2691 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.650 Folding energies... MFEI: -30.784 AMFE: -0.651 GC content %: 47.306 | |
| Tdicoccoides_TRIDC1AG016100.6 TRIDC1AG016100.6 |
Low | No | 3643 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -28.982 AMFE: -0.653 GC content %: 44.414 | |
| Tdicoccoides_TRIDC1AG016100.7 TRIDC1AG016100.7 |
Low | No | 2173 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -30.244 AMFE: -0.647 GC content %: 46.756 | |
| Tdicoccoides_TRIDC1AG016100.8 TRIDC1AG016100.8 |
Low | No | 3216 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -29.711 AMFE: -0.650 GC content %: 45.709 | |
| Tdicoccoides_TRIDC1AG016100.9 TRIDC1AG016100.9 |
Low | No | 1932 | OG0000592 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -29.508 AMFE: -0.654 GC content %: 45.135 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG016100.1 | SwissProt | 2021-04-01 | Q10CH5 | 4.25e-5 |
| Tdicoccoides_TRIDC1AG016100.8 | SwissProt | 2021-04-01 | Q10CH5 | 3.49e-5 |
| Tdicoccoides_TRIDC1AG016100.3 | SwissProt | 2021-04-01 | Q10CH5 | 3.71e-5 |
| Tdicoccoides_TRIDC1AG016100.16 | SwissProt | 2021-04-01 | Q10CH5 | 1.53e-5 |
| Tdicoccoides_TRIDC1AG016100.10 | SwissProt | 2021-04-01 | Q10CH5 | 2.4e-5 |
| Tdicoccoides_TRIDC1AG016100.9 | SwissProt | 2021-04-01 | Q10CH5 | 1.81e-5 |
| Tdicoccoides_TRIDC1AG016100.4 | SwissProt | 2021-04-01 | Q10CH5 | 3.08e-5 |
| Tdicoccoides_TRIDC1AG016100.17 | SwissProt | 2021-04-01 | Q10CH5 | 4.85e-6 |
| Tdicoccoides_TRIDC1AG016100.11 | SwissProt | 2021-04-01 | Q10CH5 | 1.74e-5 |
| Tdicoccoides_TRIDC1AG016100.5 | SwissProt | 2021-04-01 | Q10CH5 | 2.8e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
