Tdicoccoides TRIDC1AG020440-20703
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG020440-20703 [ TRIDC1AG020440-20703] |
1A | 224405049 | 224408817 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG020440.12 TRIDC1AG020440.12 |
High | No | 1452 | OG0002238 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -25.275 AMFE: -0.635 GC content %: 39.807 | |
| Tdicoccoides_TRIDC1AG020440.2 TRIDC1AG020440.2 |
High | No | 1124 | OG0002238 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -27.909 AMFE: -0.631 GC content %: 44.217 | |
| Tdicoccoides_TRIDC1AG020440.3 TRIDC1AG020440.3 |
High | No | 1776 | OG0002238 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -25.664 AMFE: -0.651 GC content %: 39.414 | |
| Tdicoccoides_TRIDC1AG020440.4 TRIDC1AG020440.4 |
High | No | 1535 | OG0002238 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -27.544 AMFE: -0.648 GC content %: 42.476 | |
| Tdicoccoides_TRIDC1AG020440.5 TRIDC1AG020440.5 |
High | No | 1949 | OG0002238 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -26.742 AMFE: -0.659 GC content %: 40.585 | |
| Tdicoccoides_TRIDC1AG020440.6 TRIDC1AG020440.6 |
High | No | 1492 | OG0002238 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -26.984 AMFE: -0.654 GC content %: 41.287 | |
| Tdicoccoides_TRIDC1AG020440.7 TRIDC1AG020440.7 |
High | No | 1916 | OG0002238 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -25.924 AMFE: -0.660 GC content %: 39.301 | |
| Tdicoccoides_TRIDC1AG020440.9 TRIDC1AG020440.9 |
High | No | 557 | OG0353123 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -20.323 AMFE: -0.599 GC content %: 33.932 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
