Tdicoccoides TRIDC1AG021580
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG021580 [ TRIDC1AG021580] |
1A | 247446365 | 247451823 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG021580.1 TRIDC1AG021580.1 |
Low | No | 1541 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -29.228 AMFE: -0.645 GC content %: 45.295 | |
| Tdicoccoides_TRIDC1AG021580.10 TRIDC1AG021580.10 |
Low | No | 1013 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -29.092 AMFE: -0.631 GC content %: 46.101 | |
| Tdicoccoides_TRIDC1AG021580.11 TRIDC1AG021580.11 |
Low | No | 824 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -30.825 AMFE: -0.632 GC content %: 48.786 | |
| Tdicoccoides_TRIDC1AG021580.12 TRIDC1AG021580.12 |
Low | No | 881 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -28.354 AMFE: -0.618 GC content %: 45.857 | |
| Tdicoccoides_TRIDC1AG021580.13 TRIDC1AG021580.13 |
Low | No | 1240 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -26.484 AMFE: -0.632 GC content %: 41.935 | |
| Tdicoccoides_TRIDC1AG021580.14 TRIDC1AG021580.14 |
Low | No | 623 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -29.567 AMFE: -0.612 GC content %: 48.315 | |
| Tdicoccoides_TRIDC1AG021580.15 TRIDC1AG021580.15 |
High | No | 465 | OG0353130 | Get ORF Coding potential... Type: noncoding Potential: -1.469 Folding energies... MFEI: -33.634 AMFE: -0.530 GC content %: 63.441 | |
| Tdicoccoides_TRIDC1AG021580.2 TRIDC1AG021580.2 |
Low | No | 1749 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -29.457 AMFE: -0.641 GC content %: 45.969 | |
| Tdicoccoides_TRIDC1AG021580.3 TRIDC1AG021580.3 |
Low | No | 1732 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -29.215 AMFE: -0.637 GC content %: 45.843 | |
| Tdicoccoides_TRIDC1AG021580.4 TRIDC1AG021580.4 |
Low | No | 2664 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -27.076 AMFE: -0.656 GC content %: 41.254 | |
| Tdicoccoides_TRIDC1AG021580.5 TRIDC1AG021580.5 |
Low | No | 1487 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -29.650 AMFE: -0.637 GC content %: 46.537 | |
| Tdicoccoides_TRIDC1AG021580.6 TRIDC1AG021580.6 |
Low | No | 1645 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -29.860 AMFE: -0.645 GC content %: 46.322 | |
| Tdicoccoides_TRIDC1AG021580.7 TRIDC1AG021580.7 |
Low | No | 2496 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -27.672 AMFE: -0.675 GC content %: 41.026 | |
| Tdicoccoides_TRIDC1AG021580.8 TRIDC1AG021580.8 |
Low | No | 1563 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -27.127 AMFE: -0.671 GC content %: 40.435 | |
| Tdicoccoides_TRIDC1AG021580.9 TRIDC1AG021580.9 |
Low | No | 1409 | OG0000200 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -26.913 AMFE: -0.658 GC content %: 40.880 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG021580.5 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1AG021580.11 | SwissProt | 2021-04-01 | Q5JK20 | 7.7e-6 |
| Tdicoccoides_TRIDC1AG021580.9 | SwissProt | 2021-04-01 | Q5JK20 | 2.54e-5 |
| Tdicoccoides_TRIDC1AG021580.4 | SwissProt | 2021-04-01 | Q5JK20 | 6.39e-5 |
| Tdicoccoides_TRIDC1AG021580.6 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1AG021580.12 | SwissProt | 2021-04-01 | Q5JK20 | 9.31e-6 |
| Tdicoccoides_TRIDC1AG021580.1 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Tdicoccoides_TRIDC1AG021580.5 | SwissProt | 2021-04-01 | Q5JK20 | 2.78e-5 |
| Tdicoccoides_TRIDC1AG021580.13 | SwissProt | 2021-04-01 | Q5JK20 | 2.01e-5 |
| Tdicoccoides_TRIDC1AG021580.2 | RepBase (RepeatMasker) | 2014-01-31 | Unknown |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
