Tdicoccoides TRIDC1AG024750
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG024750 [ TRIDC1AG024750] |
1A | 293230617 | 293234043 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG024750.1 TRIDC1AG024750.1 |
Low | No | 1834 | OG0002240 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -24.711 AMFE: -0.658 GC content %: 37.568 | |
| Tdicoccoides_TRIDC1AG024750.2 TRIDC1AG024750.2 |
Low | No | 2418 | OG0002240 | Get ORF Coding potential... Type: noncoding Potential: -0.339 Folding energies... MFEI: -27.366 AMFE: -0.637 GC content %: 42.928 | |
| Tdicoccoides_TRIDC1AG024750.3 TRIDC1AG024750.3 |
Low | No | 1624 | OG0002240 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -26.700 AMFE: -0.600 GC content %: 44.520 | |
| Tdicoccoides_TRIDC1AG024750.4 TRIDC1AG024750.4 |
Low | No | 2048 | OG0002240 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -31.499 AMFE: -0.662 GC content %: 47.607 | |
| Tdicoccoides_TRIDC1AG024750.5 TRIDC1AG024750.5 |
Low | No | 1028 | OG0002240 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -21.362 AMFE: -0.584 GC content %: 36.576 | |
| Tdicoccoides_TRIDC1AG024750.6 TRIDC1AG024750.6 |
Low | No | 732 | OG0002240 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -33.538 AMFE: -0.597 GC content %: 56.148 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG024750.4 | SwissProt | 2021-04-01 | Q9FEF8 | 7.63e-10 |
| Tdicoccoides_TRIDC1AG024750.5 | SwissProt | 2021-04-01 | Q9FEF8 | 1.2e-9 |
| Tdicoccoides_TRIDC1AG024750.6 | SwissProt | 2021-04-01 | Q9FEF8 | 1.01e-10 |
| Tdicoccoides_TRIDC1AG024750.1 | SwissProt | 2021-04-01 | Q9FEF8 | 2.77e-11 |
| Tdicoccoides_TRIDC1AG024750.1 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Tdicoccoides_TRIDC1AG024750.2 | SwissProt | 2021-04-01 | Q9FEF8 | 4.08e-11 |
| Tdicoccoides_TRIDC1AG024750.2 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Tdicoccoides_TRIDC1AG024750.3 | SwissProt | 2021-04-01 | Q9FEF8 | 5.43e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
