Tdicoccoides TRIDC1AG028090
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG028090 [ TRIDC1AG028090] |
1A | 337677717 | 337682617 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG028090.1 TRIDC1AG028090.1 |
High | No | 1427 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -29.811 AMFE: -0.623 GC content %: 47.863 | |
| Tdicoccoides_TRIDC1AG028090.10 TRIDC1AG028090.10 |
High | No | 4308 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -26.662 AMFE: -0.653 GC content %: 40.808 | |
| Tdicoccoides_TRIDC1AG028090.11 TRIDC1AG028090.11 |
High | No | 2845 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -28.373 AMFE: -0.651 GC content %: 43.550 | |
| Tdicoccoides_TRIDC1AG028090.12 TRIDC1AG028090.12 |
High | No | 3772 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -27.383 AMFE: -0.657 GC content %: 41.702 | |
| Tdicoccoides_TRIDC1AG028090.13 TRIDC1AG028090.13 |
High | No | 2714 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -28.791 AMFE: -0.655 GC content %: 43.957 | |
| Tdicoccoides_TRIDC1AG028090.14 TRIDC1AG028090.14 |
High | No | 3420 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -27.675 AMFE: -0.658 GC content %: 42.047 | |
| Tdicoccoides_TRIDC1AG028090.15 TRIDC1AG028090.15 |
High | No | 1718 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -26.077 AMFE: -0.666 GC content %: 39.173 | |
| Tdicoccoides_TRIDC1AG028090.2 TRIDC1AG028090.2 |
High | No | 4364 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -26.966 AMFE: -0.655 GC content %: 41.201 | |
| Tdicoccoides_TRIDC1AG028090.3 TRIDC1AG028090.3 |
High | No | 2903 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -28.543 AMFE: -0.648 GC content %: 44.023 | |
| Tdicoccoides_TRIDC1AG028090.4 TRIDC1AG028090.4 |
High | No | 3349 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -27.393 AMFE: -0.645 GC content %: 42.490 | |
| Tdicoccoides_TRIDC1AG028090.5 TRIDC1AG028090.5 |
High | No | 1891 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -27.647 AMFE: -0.626 GC content %: 44.157 | |
| Tdicoccoides_TRIDC1AG028090.6 TRIDC1AG028090.6 |
High | No | 3274 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -27.856 AMFE: -0.650 GC content %: 42.883 | |
| Tdicoccoides_TRIDC1AG028090.7 TRIDC1AG028090.7 |
High | No | 1792 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -27.517 AMFE: -0.624 GC content %: 44.085 | |
| Tdicoccoides_TRIDC1AG028090.8 TRIDC1AG028090.8 |
High | No | 2405 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -26.412 AMFE: -0.629 GC content %: 41.996 | |
| Tdicoccoides_TRIDC1AG028090.9 TRIDC1AG028090.9 |
High | No | 2779 | OG0000261 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -28.302 AMFE: -0.647 GC content %: 43.721 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
