GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1AG028510 [ TRIDC1AG028510]	1A	342132298	342135547	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1AG028510.1 TRIDC1AG028510.1	High	No	725	OG0061162		Get ORF Coding potential... Type: noncoding Potential: -0.010 Folding energies... MFEI: -35.779 AMFE: -0.647 GC content %: 55.310
Tdicoccoides_TRIDC1AG028510.4 TRIDC1AG028510.4	High	No	942	OG0022781		Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -26.730 AMFE: -0.538 GC content %: 49.682
Tdicoccoides_TRIDC1AG028510.5 TRIDC1AG028510.5	High	No	949	OG0022781		Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -25.985 AMFE: -0.536 GC content %: 48.472

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).