Tdicoccoides TRIDC1AG033690
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG033690 [ TRIDC1AG033690] |
1A | 395060490 | 395064211 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG033690.1 TRIDC1AG033690.1 |
High | No | 909 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -27.888 AMFE: -0.655 GC content %: 42.574 | |
| Tdicoccoides_TRIDC1AG033690.10 TRIDC1AG033690.10 |
Low | No | 2779 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -25.642 AMFE: -0.631 GC content %: 40.662 | |
| Tdicoccoides_TRIDC1AG033690.11 TRIDC1AG033690.11 |
Low | No | 2817 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -25.619 AMFE: -0.630 GC content %: 40.682 | |
| Tdicoccoides_TRIDC1AG033690.12 TRIDC1AG033690.12 |
Low | No | 3133 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -25.282 AMFE: -0.630 GC content %: 40.153 | |
| Tdicoccoides_TRIDC1AG033690.13 TRIDC1AG033690.13 |
High | No | 1469 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -26.807 AMFE: -0.627 GC content %: 42.750 | |
| Tdicoccoides_TRIDC1AG033690.14 TRIDC1AG033690.14 |
Low | No | 3091 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -25.322 AMFE: -0.655 GC content %: 38.661 | |
| Tdicoccoides_TRIDC1AG033690.15 TRIDC1AG033690.15 |
High | No | 1542 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -27.847 AMFE: -0.609 GC content %: 45.720 | |
| Tdicoccoides_TRIDC1AG033690.16 TRIDC1AG033690.16 |
Low | No | 2221 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -26.704 AMFE: -0.634 GC content %: 42.098 | |
| Tdicoccoides_TRIDC1AG033690.17 TRIDC1AG033690.17 |
Low | No | 1980 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -25.990 AMFE: -0.631 GC content %: 41.162 | |
| Tdicoccoides_TRIDC1AG033690.18 TRIDC1AG033690.18 |
Low | No | 1411 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -25.159 AMFE: -0.641 GC content %: 39.263 | |
| Tdicoccoides_TRIDC1AG033690.2 TRIDC1AG033690.2 |
High | No | 2108 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -26.276 AMFE: -0.616 GC content %: 42.647 | |
| Tdicoccoides_TRIDC1AG033690.3 TRIDC1AG033690.3 |
Low | No | 2650 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -26.132 AMFE: -0.634 GC content %: 41.245 | |
| Tdicoccoides_TRIDC1AG033690.4 TRIDC1AG033690.4 |
High | No | 1939 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -25.637 AMFE: -0.641 GC content %: 40.021 | |
| Tdicoccoides_TRIDC1AG033690.5 TRIDC1AG033690.5 |
Low | No | 2191 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -25.372 AMFE: -0.652 GC content %: 38.932 | |
| Tdicoccoides_TRIDC1AG033690.6 TRIDC1AG033690.6 |
High | No | 981 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -26.972 AMFE: -0.613 GC content %: 44.037 | |
| Tdicoccoides_TRIDC1AG033690.7 TRIDC1AG033690.7 |
High | No | 814 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -28.305 AMFE: -0.644 GC content %: 43.980 | |
| Tdicoccoides_TRIDC1AG033690.8 TRIDC1AG033690.8 |
High | No | 972 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -27.942 AMFE: -0.585 GC content %: 47.737 | |
| Tdicoccoides_TRIDC1AG033690.9 TRIDC1AG033690.9 |
High | No | 1722 | OG0000658 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -26.957 AMFE: -0.612 GC content %: 44.019 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG033690.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Tdicoccoides_TRIDC1AG033690.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
