Tdicoccoides TRIDC1AG035990
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG035990 [ TRIDC1AG035990] |
1A | 426323352 | 426329553 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG035990.1 TRIDC1AG035990.1 |
Low | No | 5025 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -27.735 AMFE: -0.666 GC content %: 41.632 | |
| Tdicoccoides_TRIDC1AG035990.10 TRIDC1AG035990.10 |
High | No | 1991 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -28.272 AMFE: -0.654 GC content %: 43.245 | |
| Tdicoccoides_TRIDC1AG035990.11 TRIDC1AG035990.11 |
Low | No | 3954 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -28.136 AMFE: -0.655 GC content %: 42.969 | |
| Tdicoccoides_TRIDC1AG035990.12 TRIDC1AG035990.12 |
Low | No | 4245 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -28.369 AMFE: -0.672 GC content %: 42.214 | |
| Tdicoccoides_TRIDC1AG035990.13 TRIDC1AG035990.13 |
High | No | 1328 | OG0353381 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -30.851 AMFE: -0.640 GC content %: 48.193 | |
| Tdicoccoides_TRIDC1AG035990.14 TRIDC1AG035990.14 |
Low | No | 3833 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -27.803 AMFE: -0.661 GC content %: 42.030 | |
| Tdicoccoides_TRIDC1AG035990.15 TRIDC1AG035990.15 |
Low | No | 3711 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.828 Folding energies... MFEI: -27.790 AMFE: -0.657 GC content %: 42.280 | |
| Tdicoccoides_TRIDC1AG035990.16 TRIDC1AG035990.16 |
Low | No | 3784 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -27.429 AMFE: -0.660 GC content %: 41.570 | |
| Tdicoccoides_TRIDC1AG035990.17 TRIDC1AG035990.17 |
Low | No | 2967 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -28.681 AMFE: -0.658 GC content %: 43.613 | |
| Tdicoccoides_TRIDC1AG035990.18 TRIDC1AG035990.18 |
Low | No | 4542 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -26.999 AMFE: -0.663 GC content %: 40.709 | |
| Tdicoccoides_TRIDC1AG035990.19 TRIDC1AG035990.19 |
Low | No | 3562 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -27.748 AMFE: -0.660 GC content %: 42.027 | |
| Tdicoccoides_TRIDC1AG035990.2 TRIDC1AG035990.2 |
High | No | 1866 | OG0353382 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -31.624 AMFE: -0.677 GC content %: 46.677 | |
| Tdicoccoides_TRIDC1AG035990.20 TRIDC1AG035990.20 |
High | No | 1340 | OG0000217 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -30.246 AMFE: -0.664 GC content %: 45.522 | |
| Tdicoccoides_TRIDC1AG035990.21 TRIDC1AG035990.21 |
Low | No | 3766 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -27.634 AMFE: -0.669 GC content %: 41.290 | |
| Tdicoccoides_TRIDC1AG035990.22 TRIDC1AG035990.22 |
Low | No | 4483 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -26.873 AMFE: -0.663 GC content %: 40.531 | |
| Tdicoccoides_TRIDC1AG035990.23 TRIDC1AG035990.23 |
Low | No | 4627 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -26.706 AMFE: -0.659 GC content %: 40.523 | |
| Tdicoccoides_TRIDC1AG035990.25 TRIDC1AG035990.25 |
Low | No | 5052 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -26.744 AMFE: -0.669 GC content %: 39.984 | |
| Tdicoccoides_TRIDC1AG035990.26 TRIDC1AG035990.26 |
Low | No | 1973 | OG0061184 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -27.922 AMFE: -0.671 GC content %: 41.612 | |
| Tdicoccoides_TRIDC1AG035990.27 TRIDC1AG035990.27 |
Low | No | 4233 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -27.637 AMFE: -0.676 GC content %: 40.893 | |
| Tdicoccoides_TRIDC1AG035990.28 TRIDC1AG035990.28 |
Low | No | 4312 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -26.742 AMFE: -0.662 GC content %: 40.376 | |
| Tdicoccoides_TRIDC1AG035990.29 TRIDC1AG035990.29 |
Low | No | 4210 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -26.519 AMFE: -0.661 GC content %: 40.119 | |
| Tdicoccoides_TRIDC1AG035990.3 TRIDC1AG035990.3 |
Low | No | 3885 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -28.510 AMFE: -0.658 GC content %: 43.346 | |
| Tdicoccoides_TRIDC1AG035990.30 TRIDC1AG035990.30 |
Low | No | 3286 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -27.261 AMFE: -0.661 GC content %: 41.236 | |
| Tdicoccoides_TRIDC1AG035990.31 TRIDC1AG035990.31 |
Low | No | 3589 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -26.296 AMFE: -0.660 GC content %: 39.872 | |
| Tdicoccoides_TRIDC1AG035990.32 TRIDC1AG035990.32 |
Low | No | 3946 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -26.075 AMFE: -0.659 GC content %: 39.559 | |
| Tdicoccoides_TRIDC1AG035990.33 TRIDC1AG035990.33 |
Low | No | 1962 | OG0061184 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -26.728 AMFE: -0.660 GC content %: 40.469 | |
| Tdicoccoides_TRIDC1AG035990.34 TRIDC1AG035990.34 |
High | No | 1025 | OG0000217 | Get ORF Coding potential... Type: noncoding Potential: -0.642 Folding energies... MFEI: -30.283 AMFE: -0.662 GC content %: 45.756 | |
| Tdicoccoides_TRIDC1AG035990.35 TRIDC1AG035990.35 |
Low | No | 4142 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -26.654 AMFE: -0.666 GC content %: 40.029 | |
| Tdicoccoides_TRIDC1AG035990.36 TRIDC1AG035990.36 |
Low | No | 4735 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -26.629 AMFE: -0.672 GC content %: 39.641 | |
| Tdicoccoides_TRIDC1AG035990.37 TRIDC1AG035990.37 |
Low | No | 2560 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -26.581 AMFE: -0.646 GC content %: 41.172 | |
| Tdicoccoides_TRIDC1AG035990.4 TRIDC1AG035990.4 |
Low | No | 5237 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -27.682 AMFE: -0.669 GC content %: 41.379 | |
| Tdicoccoides_TRIDC1AG035990.5 TRIDC1AG035990.5 |
Low | No | 3989 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -28.704 AMFE: -0.657 GC content %: 43.720 | |
| Tdicoccoides_TRIDC1AG035990.6 TRIDC1AG035990.6 |
Low | No | 3712 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -28.536 AMFE: -0.657 GC content %: 43.427 | |
| Tdicoccoides_TRIDC1AG035990.7 TRIDC1AG035990.7 |
Low | No | 5312 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -27.310 AMFE: -0.663 GC content %: 41.171 | |
| Tdicoccoides_TRIDC1AG035990.8 TRIDC1AG035990.8 |
Low | No | 4022 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -28.506 AMFE: -0.661 GC content %: 43.113 | |
| Tdicoccoides_TRIDC1AG035990.9 TRIDC1AG035990.9 |
Low | No | 3798 | OG0000201 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -28.607 AMFE: -0.660 GC content %: 43.365 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG035990.19 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC1AG035990.37 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Tdicoccoides_TRIDC1AG035990.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC1AG035990.31 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC1AG035990.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC1AG035990.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC1AG035990.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Tdicoccoides_TRIDC1AG035990.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC1AG035990.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR | |
| Tdicoccoides_TRIDC1AG035990.32 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100; DNA/MULE-MuDR |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
