Tdicoccoides TRIDC1AG036910
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG036910 [ TRIDC1AG036910] |
1A | 436110201 | 436113107 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG036910.10 TRIDC1AG036910.10 |
Low | No | 1461 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -28.645 AMFE: -0.643 GC content %: 44.559 | |
| Tdicoccoides_TRIDC1AG036910.12 TRIDC1AG036910.12 |
Low | No | 1458 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.687 Folding energies... MFEI: -28.642 AMFE: -0.643 GC content %: 44.513 | |
| Tdicoccoides_TRIDC1AG036910.13 TRIDC1AG036910.13 |
Low | No | 1412 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -27.330 AMFE: -0.632 GC content %: 43.272 | |
| Tdicoccoides_TRIDC1AG036910.16 TRIDC1AG036910.16 |
Low | No | 1558 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -29.807 AMFE: -0.690 GC content %: 43.196 | |
| Tdicoccoides_TRIDC1AG036910.17 TRIDC1AG036910.17 |
Low | No | 988 | OG0353402 | Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -27.328 AMFE: -0.657 GC content %: 41.599 | |
| Tdicoccoides_TRIDC1AG036910.18 TRIDC1AG036910.18 |
Low | No | 1808 | OG0061185 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -28.507 AMFE: -0.693 GC content %: 41.150 | |
| Tdicoccoides_TRIDC1AG036910.19 TRIDC1AG036910.19 |
Low | No | 1649 | OG0061185 | Get ORF Coding potential... Type: noncoding Potential: -0.699 Folding energies... MFEI: -26.428 AMFE: -0.644 GC content %: 41.055 | |
| Tdicoccoides_TRIDC1AG036910.23 TRIDC1AG036910.23 |
Low | No | 1522 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -26.399 AMFE: -0.638 GC content %: 41.393 | |
| Tdicoccoides_TRIDC1AG036910.27 TRIDC1AG036910.27 |
Low | No | 1582 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.695 Folding energies... MFEI: -26.820 AMFE: -0.657 GC content %: 40.834 | |
| Tdicoccoides_TRIDC1AG036910.30 TRIDC1AG036910.30 |
High | No | 693 | OG0019502 | Get ORF Coding potential... Type: noncoding Potential: -0.405 Folding energies... MFEI: -26.248 AMFE: -0.617 GC content %: 42.569 | |
| Tdicoccoides_TRIDC1AG036910.31 TRIDC1AG036910.31 |
High | No | 1179 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.644 Folding energies... MFEI: -26.913 AMFE: -0.637 GC content %: 42.239 | |
| Tdicoccoides_TRIDC1AG036910.32 TRIDC1AG036910.32 |
High | No | 1259 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -26.291 AMFE: -0.634 GC content %: 41.461 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG036910.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC1AG036910.18 | SwissProt | 2021-04-01 | P0DPD7 | 5.58e-6 |
| Tdicoccoides_TRIDC1AG036910.10 | SwissProt | 2021-04-01 | P0DPE0 | 2.56e-10 |
| Tdicoccoides_TRIDC1AG036910.23 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC1AG036910.19 | SwissProt | 2021-04-01 | P0DPD7 | 4.93e-6 |
| Tdicoccoides_TRIDC1AG036910.12 | SwissProt | 2021-04-01 | P0DPE0 | 2.56e-10 |
| Tdicoccoides_TRIDC1AG036910.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Mariner | |
| Tdicoccoides_TRIDC1AG036910.23 | SwissProt | 2021-04-01 | P0DPD7 | 9.03e-9 |
| Tdicoccoides_TRIDC1AG036910.13 | SwissProt | 2021-04-01 | P0DPD7 | 1.87e-8 |
| Tdicoccoides_TRIDC1AG036910.27 | SwissProt | 2021-04-01 | P0DPE0 | 8.88e-7 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
