Tdicoccoides TRIDC1AG044240
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG044240 [ TRIDC1AG044240] |
1A | 495806249 | 495810741 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG044240.10 TRIDC1AG044240.10 |
Low | No | 1711 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -29.831 AMFE: -0.697 GC content %: 42.782 | |
| Tdicoccoides_TRIDC1AG044240.11 TRIDC1AG044240.11 |
Low | No | 1703 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -29.888 AMFE: -0.701 GC content %: 42.631 | |
| Tdicoccoides_TRIDC1AG044240.15 TRIDC1AG044240.15 |
Low | No | 882 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -33.980 AMFE: -0.683 GC content %: 49.773 | |
| Tdicoccoides_TRIDC1AG044240.16 TRIDC1AG044240.16 |
Low | No | 1708 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -29.971 AMFE: -0.706 GC content %: 42.447 | |
| Tdicoccoides_TRIDC1AG044240.18 TRIDC1AG044240.18 |
Low | No | 1664 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -30.090 AMFE: -0.712 GC content %: 42.248 | |
| Tdicoccoides_TRIDC1AG044240.20 TRIDC1AG044240.20 |
Low | No | 1102 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -31.815 AMFE: -0.686 GC content %: 46.370 | |
| Tdicoccoides_TRIDC1AG044240.22 TRIDC1AG044240.22 |
Low | No | 1479 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -28.790 AMFE: -0.701 GC content %: 41.041 | |
| Tdicoccoides_TRIDC1AG044240.23 TRIDC1AG044240.23 |
Low | No | 1029 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -29.961 AMFE: -0.722 GC content %: 41.497 | |
| Tdicoccoides_TRIDC1AG044240.24 TRIDC1AG044240.24 |
Low | No | 1145 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -28.865 AMFE: -0.708 GC content %: 40.786 | |
| Tdicoccoides_TRIDC1AG044240.27 TRIDC1AG044240.27 |
Low | No | 731 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -30.178 AMFE: -0.677 GC content %: 44.596 | |
| Tdicoccoides_TRIDC1AG044240.4 TRIDC1AG044240.4 |
Low | No | 737 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -31.859 AMFE: -0.663 GC content %: 48.033 | |
| Tdicoccoides_TRIDC1AG044240.7 TRIDC1AG044240.7 |
Low | No | 1691 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -30.769 AMFE: -0.711 GC content %: 43.288 | |
| Tdicoccoides_TRIDC1AG044240.8 TRIDC1AG044240.8 |
Low | No | 1788 | OG0001238 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -30.386 AMFE: -0.712 GC content %: 42.673 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG044240.4 | SwissProt | 2021-04-01 | O94387 | 2.08e-8 |
| Tdicoccoides_TRIDC1AG044240.20 | SwissProt | 2021-04-01 | O94387 | 3.77e-8 |
| Tdicoccoides_TRIDC1AG044240.10 | SwissProt | 2021-04-01 | O94387 | 3.38e-7 |
| Tdicoccoides_TRIDC1AG044240.7 | SwissProt | 2021-04-01 | O94387 | 7.61e-10 |
| Tdicoccoides_TRIDC1AG044240.22 | SwissProt | 2021-04-01 | O94387 | 1.5e-8 |
| Tdicoccoides_TRIDC1AG044240.11 | SwissProt | 2021-04-01 | O94387 | 6.63e-8 |
| Tdicoccoides_TRIDC1AG044240.8 | SwissProt | 2021-04-01 | O94387 | 8.11e-10 |
| Tdicoccoides_TRIDC1AG044240.23 | SwissProt | 2021-04-01 | O94387 | 6.29e-8 |
| Tdicoccoides_TRIDC1AG044240.15 | SwissProt | 2021-04-01 | O94387 | 2.86e-8 |
| Tdicoccoides_TRIDC1AG044240.24 | SwissProt | 2021-04-01 | O94387 | 7.3e-8 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
