Tdicoccoides TRIDC1AG047360
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG047360 [ TRIDC1AG047360] |
1A | 511644864 | 511652944 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG047360.1 TRIDC1AG047360.1 |
Low | No | 1376 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -33.169 AMFE: -0.679 GC content %: 48.837 | |
| Tdicoccoides_TRIDC1AG047360.10 TRIDC1AG047360.10 |
Low | No | 1692 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -36.483 AMFE: -0.670 GC content %: 54.433 | |
| Tdicoccoides_TRIDC1AG047360.11 TRIDC1AG047360.11 |
Low | No | 3289 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -31.244 AMFE: -0.689 GC content %: 45.333 | |
| Tdicoccoides_TRIDC1AG047360.12 TRIDC1AG047360.12 |
High | No | 1336 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -23.368 AMFE: -0.680 GC content %: 34.356 | |
| Tdicoccoides_TRIDC1AG047360.2 TRIDC1AG047360.2 |
Low | No | 1367 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -32.985 AMFE: -0.674 GC content %: 48.939 | |
| Tdicoccoides_TRIDC1AG047360.3 TRIDC1AG047360.3 |
Low | No | 1766 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -31.897 AMFE: -0.684 GC content %: 46.659 | |
| Tdicoccoides_TRIDC1AG047360.4 TRIDC1AG047360.4 |
Low | No | 1697 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -40.530 AMFE: -0.722 GC content %: 56.099 | |
| Tdicoccoides_TRIDC1AG047360.7 TRIDC1AG047360.7 |
Low | No | 2147 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -37.331 AMFE: -0.703 GC content %: 53.097 | |
| Tdicoccoides_TRIDC1AG047360.8 TRIDC1AG047360.8 |
Low | No | 3007 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -35.411 AMFE: -0.710 GC content %: 49.884 | |
| Tdicoccoides_TRIDC1AG047360.9 TRIDC1AG047360.9 |
Low | No | 1508 | OG0001239 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -37.792 AMFE: -0.690 GC content %: 54.775 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG047360.8 | SwissProt | 2021-04-01 | Q93YP9 | 7.69e-5 |
| Tdicoccoides_TRIDC1AG047360.11 | SwissProt | 2021-04-01 | Q93YP9 | 3.79e-10 |
| Tdicoccoides_TRIDC1AG047360.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1 | |
| Tdicoccoides_TRIDC1AG047360.2 | SwissProt | 2021-04-01 | Q93YP9 | 1.63e-5 |
| Tdicoccoides_TRIDC1AG047360.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1 | |
| Tdicoccoides_TRIDC1AG047360.3 | SwissProt | 2021-04-01 | Q93YP9 | 3.28e-5 |
| Tdicoccoides_TRIDC1AG047360.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1 | |
| Tdicoccoides_TRIDC1AG047360.4 | SwissProt | 2021-04-01 | Q93YP9 | 5.18e-4 |
| Tdicoccoides_TRIDC1AG047360.1 | SwissProt | 2021-04-01 | Q93YP9 | 1.22e-4 |
| Tdicoccoides_TRIDC1AG047360.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
