GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1AG051320 [ TRIDC1AG051320]	1A	532529337	532534243	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1AG051320.4 TRIDC1AG051320.4	Low	No	583	OG0353623		Get ORF Coding potential... Type: noncoding Potential: -0.450 Folding energies... MFEI: -30.069 AMFE: -0.644 GC content %: 46.655
Tdicoccoides_TRIDC1AG051320.5 TRIDC1AG051320.5	High	No	387	OG0353624		Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -39.948 AMFE: -0.626 GC content %: 63.824

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Tdicoccoides_TRIDC1AG051320.4	SwissProt	2021-04-01	Q8GY11	4.23e-14

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).