Tdicoccoides TRIDC1AG051820
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG051820 [ TRIDC1AG051820] |
1A | 534163410 | 534167060 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1AG051820.1 TRIDC1AG051820.1 |
High | No | 1081 | OG0009344 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -27.151 AMFE: -0.618 GC content %: 43.941 | |
| Tdicoccoides_TRIDC1AG051820.2 TRIDC1AG051820.2 |
High | No | 1631 | OG0009344 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -27.658 AMFE: -0.623 GC content %: 44.390 | |
| Tdicoccoides_TRIDC1AG051820.3 TRIDC1AG051820.3 |
High | No | 1634 | OG0009344 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -27.870 AMFE: -0.627 GC content %: 44.431 | |
| Tdicoccoides_TRIDC1AG051820.4 TRIDC1AG051820.4 |
High | No | 1010 | OG0009344 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -28.267 AMFE: -0.605 GC content %: 46.733 | |
| Tdicoccoides_TRIDC1AG051820.5 TRIDC1AG051820.5 |
High | No | 1316 | OG0009344 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -28.701 AMFE: -0.599 GC content %: 47.948 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
