GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1AG060510 [ TRIDC1AG060510]	1A	571674295	571676282	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1AG060510.1 TRIDC1AG060510.1	High	No	814	OG0015163		Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -33.857 AMFE: -0.647 GC content %: 52.334
Tdicoccoides_TRIDC1AG060510.2 TRIDC1AG060510.2	High	No	689	OG0015163		Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -30.595 AMFE: -0.703 GC content %: 43.541
Tdicoccoides_TRIDC1AG060510.3 TRIDC1AG060510.3	High	No	559	OG0015163		Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -34.991 AMFE: -0.629 GC content %: 55.635

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).