Tdicoccoides TRIDC1BG004760
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG004760 [ TRIDC1BG004760] |
1B | 21634167 | 21638079 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG004760.1 TRIDC1BG004760.1 |
Low | No | 2672 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -27.388 AMFE: -0.656 GC content %: 41.729 | |
| Tdicoccoides_TRIDC1BG004760.10 TRIDC1BG004760.10 |
Low | No | 1926 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -27.710 AMFE: -0.680 GC content %: 40.758 | |
| Tdicoccoides_TRIDC1BG004760.11 TRIDC1BG004760.11 |
Low | No | 2736 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -27.036 AMFE: -0.662 GC content %: 40.826 | |
| Tdicoccoides_TRIDC1BG004760.12 TRIDC1BG004760.12 |
Low | No | 2238 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -28.691 AMFE: -0.685 GC content %: 41.868 | |
| Tdicoccoides_TRIDC1BG004760.13 TRIDC1BG004760.13 |
Low | No | 3173 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -26.889 AMFE: -0.673 GC content %: 39.962 | |
| Tdicoccoides_TRIDC1BG004760.14 TRIDC1BG004760.14 |
Low | No | 3099 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -26.718 AMFE: -0.668 GC content %: 39.981 | |
| Tdicoccoides_TRIDC1BG004760.15 TRIDC1BG004760.15 |
Low | No | 3528 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -26.414 AMFE: -0.678 GC content %: 38.946 | |
| Tdicoccoides_TRIDC1BG004760.16 TRIDC1BG004760.16 |
Low | No | 2554 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -27.169 AMFE: -0.649 GC content %: 41.895 | |
| Tdicoccoides_TRIDC1BG004760.17 TRIDC1BG004760.17 |
Low | No | 2518 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -27.276 AMFE: -0.688 GC content %: 39.635 | |
| Tdicoccoides_TRIDC1BG004760.18 TRIDC1BG004760.18 |
Low | No | 3099 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -26.157 AMFE: -0.669 GC content %: 39.109 | |
| Tdicoccoides_TRIDC1BG004760.19 TRIDC1BG004760.19 |
Low | No | 2938 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -26.419 AMFE: -0.669 GC content %: 39.483 | |
| Tdicoccoides_TRIDC1BG004760.2 TRIDC1BG004760.2 |
Low | No | 3094 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -27.169 AMFE: -0.668 GC content %: 40.659 | |
| Tdicoccoides_TRIDC1BG004760.20 TRIDC1BG004760.20 |
Low | No | 2181 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -26.919 AMFE: -0.675 GC content %: 39.890 | |
| Tdicoccoides_TRIDC1BG004760.21 TRIDC1BG004760.21 |
Low | No | 3293 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -25.897 AMFE: -0.676 GC content %: 38.293 | |
| Tdicoccoides_TRIDC1BG004760.22 TRIDC1BG004760.22 |
Low | No | 2956 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -26.055 AMFE: -0.667 GC content %: 39.039 | |
| Tdicoccoides_TRIDC1BG004760.23 TRIDC1BG004760.23 |
Low | No | 3327 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -25.879 AMFE: -0.675 GC content %: 38.323 | |
| Tdicoccoides_TRIDC1BG004760.24 TRIDC1BG004760.24 |
Low | No | 2908 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -25.983 AMFE: -0.664 GC content %: 39.133 | |
| Tdicoccoides_TRIDC1BG004760.25 TRIDC1BG004760.25 |
Low | No | 1712 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -25.561 AMFE: -0.683 GC content %: 37.442 | |
| Tdicoccoides_TRIDC1BG004760.3 TRIDC1BG004760.3 |
Low | No | 2236 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -27.075 AMFE: -0.684 GC content %: 39.580 | |
| Tdicoccoides_TRIDC1BG004760.4 TRIDC1BG004760.4 |
Low | No | 3536 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -26.510 AMFE: -0.676 GC content %: 39.225 | |
| Tdicoccoides_TRIDC1BG004760.5 TRIDC1BG004760.5 |
Low | No | 1545 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -26.977 AMFE: -0.626 GC content %: 43.107 | |
| Tdicoccoides_TRIDC1BG004760.6 TRIDC1BG004760.6 |
Low | No | 2955 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.076 AMFE: -0.662 GC content %: 40.880 | |
| Tdicoccoides_TRIDC1BG004760.7 TRIDC1BG004760.7 |
Low | No | 3515 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -26.410 AMFE: -0.673 GC content %: 39.260 | |
| Tdicoccoides_TRIDC1BG004760.8 TRIDC1BG004760.8 |
Low | No | 1827 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -29.015 AMFE: -0.659 GC content %: 44.007 | |
| Tdicoccoides_TRIDC1BG004760.9 TRIDC1BG004760.9 |
Low | No | 3160 | OG0000307 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -26.807 AMFE: -0.670 GC content %: 40.000 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG004760.8 | SwissProt | 2021-04-01 | O49460 | 9.19e-6 |
| Tdicoccoides_TRIDC1BG004760.23 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron; Satellite; SINE/tRNA | |
| Tdicoccoides_TRIDC1BG004760.3 | SwissProt | 2021-04-01 | O49460 | 6.74e-8 |
| Tdicoccoides_TRIDC1BG004760.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron; Satellite; SINE/tRNA | |
| Tdicoccoides_TRIDC1BG004760.13 | SwissProt | 2021-04-01 | O49460 | 3.77e-5 |
| Tdicoccoides_TRIDC1BG004760.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron; Satellite; SINE/tRNA | |
| Tdicoccoides_TRIDC1BG004760.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron; Satellite; SINE/tRNA | |
| Tdicoccoides_TRIDC1BG004760.9 | SwissProt | 2021-04-01 | O49460 | 1.32e-5 |
| Tdicoccoides_TRIDC1BG004760.24 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron; Satellite; SINE/tRNA | |
| Tdicoccoides_TRIDC1BG004760.4 | SwissProt | 2021-04-01 | O49460 | 3.57e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
