Tdicoccoides TRIDC1BG007340
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG007340 [ TRIDC1BG007340] |
1B | 43908263 | 43916265 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG007340.10 TRIDC1BG007340.10 |
High | No | 2587 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -33.657 AMFE: -0.664 GC content %: 50.676 | |
| Tdicoccoides_TRIDC1BG007340.11 TRIDC1BG007340.11 |
High | No | 2723 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -34.106 AMFE: -0.683 GC content %: 49.945 | |
| Tdicoccoides_TRIDC1BG007340.12 TRIDC1BG007340.12 |
High | No | 2766 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.311 Folding energies... MFEI: -32.693 AMFE: -0.654 GC content %: 49.964 | |
| Tdicoccoides_TRIDC1BG007340.13 TRIDC1BG007340.13 |
High | No | 2264 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -31.418 AMFE: -0.638 GC content %: 49.249 | |
| Tdicoccoides_TRIDC1BG007340.14 TRIDC1BG007340.14 |
High | No | 2467 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -32.931 AMFE: -0.667 GC content %: 49.372 | |
| Tdicoccoides_TRIDC1BG007340.15 TRIDC1BG007340.15 |
High | No | 2480 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -33.851 AMFE: -0.672 GC content %: 50.363 | |
| Tdicoccoides_TRIDC1BG007340.16 TRIDC1BG007340.16 |
High | No | 2079 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.317 Folding energies... MFEI: -33.622 AMFE: -0.666 GC content %: 50.505 | |
| Tdicoccoides_TRIDC1BG007340.17 TRIDC1BG007340.17 |
High | No | 2201 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -31.731 AMFE: -0.654 GC content %: 48.523 | |
| Tdicoccoides_TRIDC1BG007340.18 TRIDC1BG007340.18 |
High | No | 2097 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -32.723 AMFE: -0.662 GC content %: 49.404 | |
| Tdicoccoides_TRIDC1BG007340.19 TRIDC1BG007340.19 |
High | No | 1594 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -32.158 AMFE: -0.669 GC content %: 48.055 | |
| Tdicoccoides_TRIDC1BG007340.20 TRIDC1BG007340.20 |
High | No | 2072 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -31.675 AMFE: -0.661 GC content %: 47.925 | |
| Tdicoccoides_TRIDC1BG007340.21 TRIDC1BG007340.21 |
High | No | 2069 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -31.991 AMFE: -0.677 GC content %: 47.221 | |
| Tdicoccoides_TRIDC1BG007340.22 TRIDC1BG007340.22 |
High | No | 1821 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -32.856 AMFE: -0.668 GC content %: 49.149 | |
| Tdicoccoides_TRIDC1BG007340.23 TRIDC1BG007340.23 |
High | No | 2111 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -31.227 AMFE: -0.656 GC content %: 47.608 | |
| Tdicoccoides_TRIDC1BG007340.24 TRIDC1BG007340.24 |
High | No | 2070 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -31.836 AMFE: -0.659 GC content %: 48.309 | |
| Tdicoccoides_TRIDC1BG007340.25 TRIDC1BG007340.25 |
High | No | 2183 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -31.017 AMFE: -0.672 GC content %: 46.175 | |
| Tdicoccoides_TRIDC1BG007340.26 TRIDC1BG007340.26 |
High | No | 1523 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -30.066 AMFE: -0.654 GC content %: 45.962 | |
| Tdicoccoides_TRIDC1BG007340.27 TRIDC1BG007340.27 |
High | No | 1650 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -30.927 AMFE: -0.653 GC content %: 47.394 | |
| Tdicoccoides_TRIDC1BG007340.28 TRIDC1BG007340.28 |
High | No | 1608 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -32.929 AMFE: -0.668 GC content %: 49.316 | |
| Tdicoccoides_TRIDC1BG007340.29 TRIDC1BG007340.29 |
High | No | 1348 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -27.693 AMFE: -0.633 GC content %: 43.769 | |
| Tdicoccoides_TRIDC1BG007340.30 TRIDC1BG007340.30 |
High | No | 1127 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -28.243 AMFE: -0.622 GC content %: 45.430 | |
| Tdicoccoides_TRIDC1BG007340.4 TRIDC1BG007340.4 |
High | No | 3303 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -32.952 AMFE: -0.681 GC content %: 48.411 | |
| Tdicoccoides_TRIDC1BG007340.5 TRIDC1BG007340.5 |
High | No | 2076 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -33.622 AMFE: -0.685 GC content %: 49.085 | |
| Tdicoccoides_TRIDC1BG007340.6 TRIDC1BG007340.6 |
High | No | 2782 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -32.200 AMFE: -0.673 GC content %: 47.843 | |
| Tdicoccoides_TRIDC1BG007340.7 TRIDC1BG007340.7 |
High | No | 2450 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -34.163 AMFE: -0.682 GC content %: 50.082 | |
| Tdicoccoides_TRIDC1BG007340.8 TRIDC1BG007340.8 |
High | No | 2993 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.314 Folding energies... MFEI: -33.832 AMFE: -0.677 GC content %: 49.950 | |
| Tdicoccoides_TRIDC1BG007340.9 TRIDC1BG007340.9 |
High | No | 2176 | OG0000262 | Get ORF Coding potential... Type: noncoding Potential: -1.324 Folding energies... MFEI: -32.050 AMFE: -0.645 GC content %: 49.678 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
