Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1BG010600 [ TRIDC1BG010600] |
1B | 65567472 | 65593500 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1BG010600.13 TRIDC1BG010600.13 |
High | No | 483 | OG0353922 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -29.689 AMFE: -0.673 GC content %: 44.099 | |
Tdicoccoides_TRIDC1BG010600.14 TRIDC1BG010600.14 |
High | No | 790 | OG0003220 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -27.937 AMFE: -0.651 GC content %: 42.911 | |
Tdicoccoides_TRIDC1BG010600.15 TRIDC1BG010600.15 |
High | No | 404 | OG0003220 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -27.797 AMFE: -0.638 GC content %: 43.564 | |
Tdicoccoides_TRIDC1BG010600.16 TRIDC1BG010600.16 |
High | No | 410 | OG0353923 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -28.561 AMFE: -0.662 GC content %: 43.171 | |
Tdicoccoides_TRIDC1BG010600.5 TRIDC1BG010600.5 |
Low | No | 947 | OG0353924 | Get ORF Coding potential... Type: noncoding Potential: -0.560 Folding energies... MFEI: -24.245 AMFE: -0.596 GC content %: 40.655 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC1BG010600.5 | SwissProt | 2021-04-01 | P37695 | 5.77e-10 |