Tdicoccoides TRIDC1BG015760
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG015760 [ TRIDC1BG015760] |
1B | 123227273 | 123234569 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG015760.1 TRIDC1BG015760.1 |
High | No | 412 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -29.369 AMFE: -0.558 GC content %: 52.670 | |
| Tdicoccoides_TRIDC1BG015760.2 TRIDC1BG015760.2 |
High | No | 995 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -26.824 AMFE: -0.598 GC content %: 44.824 | |
| Tdicoccoides_TRIDC1BG015760.3 TRIDC1BG015760.3 |
High | No | 911 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -25.521 AMFE: -0.617 GC content %: 41.383 | |
| Tdicoccoides_TRIDC1BG015760.4 TRIDC1BG015760.4 |
High | No | 1080 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -26.537 AMFE: -0.595 GC content %: 44.630 | |
| Tdicoccoides_TRIDC1BG015760.5 TRIDC1BG015760.5 |
High | No | 474 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -28.165 AMFE: -0.552 GC content %: 51.055 | |
| Tdicoccoides_TRIDC1BG015760.6 TRIDC1BG015760.6 |
High | No | 1059 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -25.845 AMFE: -0.580 GC content %: 44.570 | |
| Tdicoccoides_TRIDC1BG015760.7 TRIDC1BG015760.7 |
High | No | 841 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -26.361 AMFE: -0.602 GC content %: 43.757 | |
| Tdicoccoides_TRIDC1BG015760.8 TRIDC1BG015760.8 |
High | No | 360 | OG0003556 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -28.556 AMFE: -0.538 GC content %: 53.056 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
