Tdicoccoides TRIDC1BG017140
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG017140 [ TRIDC1BG017140] |
1B | 133646893 | 133656358 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG017140.10 TRIDC1BG017140.10 |
Low | No | 1264 | OG0009349 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -25.949 AMFE: -0.591 GC content %: 43.908 | |
| Tdicoccoides_TRIDC1BG017140.11 TRIDC1BG017140.11 |
Low | No | 1194 | OG0009349 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -25.410 AMFE: -0.602 GC content %: 42.211 | |
| Tdicoccoides_TRIDC1BG017140.7 TRIDC1BG017140.7 |
Low | No | 2291 | OG0009349 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -27.054 AMFE: -0.640 GC content %: 42.296 | |
| Tdicoccoides_TRIDC1BG017140.8 TRIDC1BG017140.8 |
Low | No | 2159 | OG0009349 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -27.230 AMFE: -0.636 GC content %: 42.844 | |
| Tdicoccoides_TRIDC1BG017140.9 TRIDC1BG017140.9 |
Low | No | 1443 | OG0009349 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -26.833 AMFE: -0.619 GC content %: 43.382 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG017140.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC1BG017140.10 | SwissProt | 2021-04-01 | Q8VY89 | 2.77e-8 |
| Tdicoccoides_TRIDC1BG017140.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Tdicoccoides_TRIDC1BG017140.11 | SwissProt | 2021-04-01 | Q8VY89 | 2.43e-8 |
| Tdicoccoides_TRIDC1BG017140.7 | SwissProt | 2021-04-01 | Q8VY89 | 7.67e-8 |
| Tdicoccoides_TRIDC1BG017140.8 | SwissProt | 2021-04-01 | Q8VY89 | 7.04e-8 |
| Tdicoccoides_TRIDC1BG017140.9 | SwissProt | 2021-04-01 | Q8VY89 | 3.61e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
