Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1BG017510 [ TRIDC1BG017510] |
1B | 138124313 | 138249993 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1BG017510.1 TRIDC1BG017510.1 |
High | No | 649 | OG0015166 | Get ORF Coding potential... Type: noncoding Potential: -0.179 Folding energies... MFEI: -25.809 AMFE: -0.623 GC content %: 41.448 | |
Tdicoccoides_TRIDC1BG017510.2 TRIDC1BG017510.2 |
High | No | 631 | OG0015166 | Get ORF Coding potential... Type: noncoding Potential: -0.199 Folding energies... MFEI: -26.054 AMFE: -0.618 GC content %: 42.155 | |
Tdicoccoides_TRIDC1BG017510.3 TRIDC1BG017510.3 |
High | No | 762 | OG0015166 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -27.493 AMFE: -0.651 GC content %: 42.257 | |
Tdicoccoides_TRIDC1BG017510.4 TRIDC1BG017510.4 |
Low | No | 1148 | OG0015166 | Get ORF Coding potential... Type: noncoding Potential: -0.192 Folding energies... MFEI: -31.868 AMFE: -0.638 GC content %: 49.913 | |
Tdicoccoides_TRIDC1BG017510.7 TRIDC1BG017510.7 |
Low | No | 593 | OG0061260 | Get ORF Coding potential... Type: noncoding Potential: -0.331 Folding energies... MFEI: -32.867 AMFE: -0.633 GC content %: 51.939 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC1BG017510.4 | SwissProt | 2021-04-01 | Q06672 | 5.28e-4 |
Tdicoccoides_TRIDC1BG017510.7 | SwissProt | 2021-04-01 | Q06672 | 3.7e-4 |