Tdicoccoides TRIDC1BG019470
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG019470 [ TRIDC1BG019470] |
1B | 159379081 | 159383263 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG019470.1 TRIDC1BG019470.1 |
High | No | 613 | OG0354030 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -33.834 AMFE: -0.634 GC content %: 53.344 | |
| Tdicoccoides_TRIDC1BG019470.10 TRIDC1BG019470.10 |
High | No | 1529 | OG0006778 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -27.770 AMFE: -0.697 GC content %: 39.830 | |
| Tdicoccoides_TRIDC1BG019470.12 TRIDC1BG019470.12 |
High | No | 1486 | OG0001874 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -29.058 AMFE: -0.694 GC content %: 41.857 | |
| Tdicoccoides_TRIDC1BG019470.4 TRIDC1BG019470.4 |
High | No | 1080 | OG0001874 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -32.407 AMFE: -0.664 GC content %: 48.796 | |
| Tdicoccoides_TRIDC1BG019470.9 TRIDC1BG019470.9 |
High | No | 497 | OG0015832 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -27.364 AMFE: -0.630 GC content %: 43.461 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
