Tdicoccoides TRIDC1BG020940
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG020940 [ TRIDC1BG020940] |
1B | 175518602 | 175529020 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG020940.14 TRIDC1BG020940.14 |
Low | No | 942 | OG0354051 | Get ORF Coding potential... Type: coding Potential: 1.909 Folding energies... MFEI: -31.709 AMFE: -0.613 GC content %: 51.699 | |
| Tdicoccoides_TRIDC1BG020940.16 TRIDC1BG020940.16 |
Low | No | 782 | OG0354052 | Get ORF Coding potential... Type: coding Potential: 0.046 Folding energies... MFEI: -39.859 AMFE: -0.632 GC content %: 63.043 | |
| Tdicoccoides_TRIDC1BG020940.17 TRIDC1BG020940.17 |
High | No | 1573 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -24.062 AMFE: -0.630 GC content %: 38.207 | |
| Tdicoccoides_TRIDC1BG020940.18 TRIDC1BG020940.18 |
High | No | 2324 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -26.820 AMFE: -0.649 GC content %: 41.351 | |
| Tdicoccoides_TRIDC1BG020940.2 TRIDC1BG020940.2 |
Low | No | 806 | OG0354053 | Get ORF Coding potential... Type: coding Potential: 1.433 Folding energies... MFEI: -27.940 AMFE: -0.596 GC content %: 46.898 | |
| Tdicoccoides_TRIDC1BG020940.20 TRIDC1BG020940.20 |
High | No | 3406 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -26.803 AMFE: -0.655 GC content %: 40.928 | |
| Tdicoccoides_TRIDC1BG020940.21 TRIDC1BG020940.21 |
High | No | 3423 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -26.912 AMFE: -0.657 GC content %: 40.958 | |
| Tdicoccoides_TRIDC1BG020940.22 TRIDC1BG020940.22 |
High | No | 2461 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -28.041 AMFE: -0.640 GC content %: 43.844 | |
| Tdicoccoides_TRIDC1BG020940.24 TRIDC1BG020940.24 |
High | No | 2468 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -27.938 AMFE: -0.636 GC content %: 43.922 | |
| Tdicoccoides_TRIDC1BG020940.25 TRIDC1BG020940.25 |
High | No | 2552 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -27.958 AMFE: -0.635 GC content %: 44.044 | |
| Tdicoccoides_TRIDC1BG020940.28 TRIDC1BG020940.28 |
High | No | 576 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -23.958 AMFE: -0.561 GC content %: 42.708 | |
| Tdicoccoides_TRIDC1BG020940.29 TRIDC1BG020940.29 |
High | No | 572 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -23.479 AMFE: -0.533 GC content %: 44.056 | |
| Tdicoccoides_TRIDC1BG020940.3 TRIDC1BG020940.3 |
Low | No | 816 | OG0061269 | Get ORF Coding potential... Type: coding Potential: 1.465 Folding energies... MFEI: -27.684 AMFE: -0.596 GC content %: 46.446 | |
| Tdicoccoides_TRIDC1BG020940.30 TRIDC1BG020940.30 |
High | No | 2319 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -28.443 AMFE: -0.644 GC content %: 44.200 | |
| Tdicoccoides_TRIDC1BG020940.31 TRIDC1BG020940.31 |
High | No | 1441 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -28.466 AMFE: -0.605 GC content %: 47.051 | |
| Tdicoccoides_TRIDC1BG020940.33 TRIDC1BG020940.33 |
High | No | 1500 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -28.607 AMFE: -0.653 GC content %: 43.800 | |
| Tdicoccoides_TRIDC1BG020940.34 TRIDC1BG020940.34 |
High | No | 2264 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -28.220 AMFE: -0.657 GC content %: 42.933 | |
| Tdicoccoides_TRIDC1BG020940.35 TRIDC1BG020940.35 |
High | No | 937 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -30.694 AMFE: -0.611 GC content %: 50.267 | |
| Tdicoccoides_TRIDC1BG020940.36 TRIDC1BG020940.36 |
High | No | 1934 | OG0000950 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -29.343 AMFE: -0.657 GC content %: 44.674 | |
| Tdicoccoides_TRIDC1BG020940.4 TRIDC1BG020940.4 |
Low | No | 882 | OG0061269 | Get ORF Coding potential... Type: coding Potential: 0.678 Folding energies... MFEI: -27.993 AMFE: -0.608 GC content %: 46.032 | |
| Tdicoccoides_TRIDC1BG020940.5 TRIDC1BG020940.5 |
Low | No | 816 | OG0354054 | Get ORF Coding potential... Type: coding Potential: 1.482 Folding energies... MFEI: -27.512 AMFE: -0.595 GC content %: 46.201 | |
| Tdicoccoides_TRIDC1BG020940.6 TRIDC1BG020940.6 |
Low | No | 881 | OG0354055 | Get ORF Coding potential... Type: coding Potential: 0.695 Folding energies... MFEI: -27.730 AMFE: -0.606 GC content %: 45.743 | |
| Tdicoccoides_TRIDC1BG020940.7 TRIDC1BG020940.7 |
Low | No | 874 | OG0354056 | Get ORF Coding potential... Type: coding Potential: 0.690 Folding energies... MFEI: -27.368 AMFE: -0.607 GC content %: 45.080 | |
| Tdicoccoides_TRIDC1BG020940.8 TRIDC1BG020940.8 |
Low | No | 809 | OG0354057 | Get ORF Coding potential... Type: coding Potential: 1.478 Folding energies... MFEI: -27.120 AMFE: -0.596 GC content %: 45.488 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG020940.2 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1BG020940.8 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1BG020940.3 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1BG020940.4 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1BG020940.5 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1BG020940.6 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1BG020940.14 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Tdicoccoides_TRIDC1BG020940.7 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
