Tdicoccoides TRIDC1BG022410
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG022410 [ TRIDC1BG022410] |
1B | 195292596 | 195296993 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG022410.1 TRIDC1BG022410.1 |
Low | No | 3103 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -30.126 AMFE: -0.654 GC content %: 46.084 | |
| Tdicoccoides_TRIDC1BG022410.10 TRIDC1BG022410.10 |
Low | No | 3059 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -28.993 AMFE: -0.660 GC content %: 43.903 | |
| Tdicoccoides_TRIDC1BG022410.11 TRIDC1BG022410.11 |
Low | No | 3086 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -30.369 AMFE: -0.652 GC content %: 46.565 | |
| Tdicoccoides_TRIDC1BG022410.12 TRIDC1BG022410.12 |
Low | No | 3596 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -29.772 AMFE: -0.661 GC content %: 45.022 | |
| Tdicoccoides_TRIDC1BG022410.13 TRIDC1BG022410.13 |
Low | No | 3797 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -29.436 AMFE: -0.660 GC content %: 44.614 | |
| Tdicoccoides_TRIDC1BG022410.14 TRIDC1BG022410.14 |
Low | No | 3418 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -29.988 AMFE: -0.659 GC content %: 45.494 | |
| Tdicoccoides_TRIDC1BG022410.15 TRIDC1BG022410.15 |
Low | No | 2820 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -28.904 AMFE: -0.678 GC content %: 42.660 | |
| Tdicoccoides_TRIDC1BG022410.16 TRIDC1BG022410.16 |
High | No | 2974 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -30.514 AMFE: -0.656 GC content %: 46.503 | |
| Tdicoccoides_TRIDC1BG022410.17 TRIDC1BG022410.17 |
Low | No | 3779 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -29.153 AMFE: -0.655 GC content %: 44.509 | |
| Tdicoccoides_TRIDC1BG022410.18 TRIDC1BG022410.18 |
Low | No | 3385 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -27.846 AMFE: -0.665 GC content %: 41.861 | |
| Tdicoccoides_TRIDC1BG022410.19 TRIDC1BG022410.19 |
Low | No | 3594 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -28.436 AMFE: -0.666 GC content %: 42.682 | |
| Tdicoccoides_TRIDC1BG022410.2 TRIDC1BG022410.2 |
Low | No | 3933 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -28.940 AMFE: -0.654 GC content %: 44.266 | |
| Tdicoccoides_TRIDC1BG022410.20 TRIDC1BG022410.20 |
Low | No | 2214 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.329 Folding energies... MFEI: -30.108 AMFE: -0.650 GC content %: 46.296 | |
| Tdicoccoides_TRIDC1BG022410.21 TRIDC1BG022410.21 |
High | No | 2164 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -30.786 AMFE: -0.659 GC content %: 46.719 | |
| Tdicoccoides_TRIDC1BG022410.22 TRIDC1BG022410.22 |
High | No | 2326 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -30.864 AMFE: -0.670 GC content %: 46.088 | |
| Tdicoccoides_TRIDC1BG022410.23 TRIDC1BG022410.23 |
Low | No | 3749 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -29.472 AMFE: -0.664 GC content %: 44.385 | |
| Tdicoccoides_TRIDC1BG022410.24 TRIDC1BG022410.24 |
Low | No | 3285 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -29.921 AMFE: -0.657 GC content %: 45.510 | |
| Tdicoccoides_TRIDC1BG022410.25 TRIDC1BG022410.25 |
Low | No | 3569 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -29.933 AMFE: -0.666 GC content %: 44.971 | |
| Tdicoccoides_TRIDC1BG022410.26 TRIDC1BG022410.26 |
Low | No | 3247 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -30.440 AMFE: -0.660 GC content %: 46.135 | |
| Tdicoccoides_TRIDC1BG022410.27 TRIDC1BG022410.27 |
Low | No | 3083 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -29.841 AMFE: -0.634 GC content %: 47.032 | |
| Tdicoccoides_TRIDC1BG022410.28 TRIDC1BG022410.28 |
Low | No | 3363 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -29.952 AMFE: -0.653 GC content %: 45.882 | |
| Tdicoccoides_TRIDC1BG022410.29 TRIDC1BG022410.29 |
Low | No | 3927 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -28.989 AMFE: -0.655 GC content %: 44.258 | |
| Tdicoccoides_TRIDC1BG022410.3 TRIDC1BG022410.3 |
Low | No | 3188 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -28.344 AMFE: -0.658 GC content %: 43.099 | |
| Tdicoccoides_TRIDC1BG022410.30 TRIDC1BG022410.30 |
Low | No | 3378 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -29.834 AMFE: -0.660 GC content %: 45.234 | |
| Tdicoccoides_TRIDC1BG022410.31 TRIDC1BG022410.31 |
Low | No | 3755 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -29.137 AMFE: -0.651 GC content %: 44.740 | |
| Tdicoccoides_TRIDC1BG022410.32 TRIDC1BG022410.32 |
Low | No | 3631 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -28.133 AMFE: -0.667 GC content %: 42.192 | |
| Tdicoccoides_TRIDC1BG022410.33 TRIDC1BG022410.33 |
Low | No | 2911 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.292 AMFE: -0.670 GC content %: 43.696 | |
| Tdicoccoides_TRIDC1BG022410.34 TRIDC1BG022410.34 |
Low | No | 3038 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -28.920 AMFE: -0.666 GC content %: 43.450 | |
| Tdicoccoides_TRIDC1BG022410.35 TRIDC1BG022410.35 |
Low | No | 3206 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -29.838 AMFE: -0.684 GC content %: 43.637 | |
| Tdicoccoides_TRIDC1BG022410.36 TRIDC1BG022410.36 |
Low | No | 3332 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -0.488 Folding energies... MFEI: -29.490 AMFE: -0.677 GC content %: 43.547 | |
| Tdicoccoides_TRIDC1BG022410.37 TRIDC1BG022410.37 |
Low | No | 2715 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -28.571 AMFE: -0.672 GC content %: 42.541 | |
| Tdicoccoides_TRIDC1BG022410.38 TRIDC1BG022410.38 |
Low | No | 2689 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -28.873 AMFE: -0.686 GC content %: 42.097 | |
| Tdicoccoides_TRIDC1BG022410.39 TRIDC1BG022410.39 |
Low | No | 1699 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -29.394 AMFE: -0.645 GC content %: 45.556 | |
| Tdicoccoides_TRIDC1BG022410.4 TRIDC1BG022410.4 |
Low | No | 3072 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -28.708 AMFE: -0.670 GC content %: 42.839 | |
| Tdicoccoides_TRIDC1BG022410.40 TRIDC1BG022410.40 |
Low | No | 2279 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -28.289 AMFE: -0.653 GC content %: 43.352 | |
| Tdicoccoides_TRIDC1BG022410.41 TRIDC1BG022410.41 |
Low | No | 2684 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -28.778 AMFE: -0.684 GC content %: 42.101 | |
| Tdicoccoides_TRIDC1BG022410.42 TRIDC1BG022410.42 |
Low | No | 2875 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -29.158 AMFE: -0.660 GC content %: 44.209 | |
| Tdicoccoides_TRIDC1BG022410.43 TRIDC1BG022410.43 |
Low | No | 2871 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -29.321 AMFE: -0.671 GC content %: 43.713 | |
| Tdicoccoides_TRIDC1BG022410.44 TRIDC1BG022410.44 |
Low | No | 2402 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -30.604 AMFE: -0.678 GC content %: 45.129 | |
| Tdicoccoides_TRIDC1BG022410.45 TRIDC1BG022410.45 |
Low | No | 1890 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -28.450 AMFE: -0.703 GC content %: 40.476 | |
| Tdicoccoides_TRIDC1BG022410.46 TRIDC1BG022410.46 |
Low | No | 2791 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -27.098 AMFE: -0.684 GC content %: 39.592 | |
| Tdicoccoides_TRIDC1BG022410.47 TRIDC1BG022410.47 |
Low | No | 2590 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -0.343 Folding energies... MFEI: -27.143 AMFE: -0.683 GC content %: 39.768 | |
| Tdicoccoides_TRIDC1BG022410.48 TRIDC1BG022410.48 |
Low | No | 2206 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -30.367 AMFE: -0.684 GC content %: 44.379 | |
| Tdicoccoides_TRIDC1BG022410.49 TRIDC1BG022410.49 |
Low | No | 2354 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -29.371 AMFE: -0.657 GC content %: 44.732 | |
| Tdicoccoides_TRIDC1BG022410.5 TRIDC1BG022410.5 |
Low | No | 3052 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -28.788 AMFE: -0.664 GC content %: 43.381 | |
| Tdicoccoides_TRIDC1BG022410.50 TRIDC1BG022410.50 |
Low | No | 2469 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -29.235 AMFE: -0.666 GC content %: 43.864 | |
| Tdicoccoides_TRIDC1BG022410.51 TRIDC1BG022410.51 |
Low | No | 2222 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -29.788 AMFE: -0.665 GC content %: 44.779 | |
| Tdicoccoides_TRIDC1BG022410.52 TRIDC1BG022410.52 |
Low | No | 2440 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -29.672 AMFE: -0.680 GC content %: 43.648 | |
| Tdicoccoides_TRIDC1BG022410.53 TRIDC1BG022410.53 |
Low | No | 2516 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -29.527 AMFE: -0.680 GC content %: 43.402 | |
| Tdicoccoides_TRIDC1BG022410.54 TRIDC1BG022410.54 |
Low | No | 1869 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -0.306 Folding energies... MFEI: -31.643 AMFE: -0.666 GC content %: 47.512 | |
| Tdicoccoides_TRIDC1BG022410.55 TRIDC1BG022410.55 |
Low | No | 2932 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -28.745 AMFE: -0.664 GC content %: 43.315 | |
| Tdicoccoides_TRIDC1BG022410.56 TRIDC1BG022410.56 |
Low | No | 2688 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -29.237 AMFE: -0.671 GC content %: 43.601 | |
| Tdicoccoides_TRIDC1BG022410.6 TRIDC1BG022410.6 |
Low | No | 3043 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -29.234 AMFE: -0.679 GC content %: 43.050 | |
| Tdicoccoides_TRIDC1BG022410.7 TRIDC1BG022410.7 |
High | No | 1950 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -28.410 AMFE: -0.638 GC content %: 44.564 | |
| Tdicoccoides_TRIDC1BG022410.8 TRIDC1BG022410.8 |
Low | No | 2767 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -28.894 AMFE: -0.649 GC content %: 44.525 | |
| Tdicoccoides_TRIDC1BG022410.9 TRIDC1BG022410.9 |
Low | No | 3109 | OG0000019 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -29.189 AMFE: -0.675 GC content %: 43.261 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG022410.20 | SwissProt | 2021-04-01 | Q7ZY11 | 4.09e-7 |
| Tdicoccoides_TRIDC1BG022410.37 | SwissProt | 2021-04-01 | Q9VNX8 | 1.69e-4 |
| Tdicoccoides_TRIDC1BG022410.51 | SwissProt | 2021-04-01 | Q9BY44 | 2.96e-11 |
| Tdicoccoides_TRIDC1BG022410.15 | SwissProt | 2021-04-01 | Q9BY44 | 5.51e-9 |
| Tdicoccoides_TRIDC1BG022410.32 | SwissProt | 2021-04-01 | Q7ZY11 | 2.39e-4 |
| Tdicoccoides_TRIDC1BG022410.47 | SwissProt | 2021-04-01 | Q9BY44 | 3.5e-11 |
| Tdicoccoides_TRIDC1BG022410.28 | SwissProt | 2021-04-01 | Q9BY44 | 6.6e-9 |
| Tdicoccoides_TRIDC1BG022410.42 | SwissProt | 2021-04-01 | Q9BY44 | 5.6e-9 |
| Tdicoccoides_TRIDC1BG022410.6 | SwissProt | 2021-04-01 | Q9BY44 | 5.96e-9 |
| Tdicoccoides_TRIDC1BG022410.10 | SwissProt | 2021-04-01 | Q9VNX8 | 7.1e-9 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
