Tdicoccoides TRIDC1BG025440

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Tdicoccoides_TRIDC1BG025440
[ TRIDC1BG025440]
1B 260554049 260579546 v1 Triticum dicoccoides (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Tdicoccoides_TRIDC1BG025440.5
TRIDC1BG025440.5
Low No 415 OG0354105
Coding potential...
Type: noncoding Potential: -0.942
Folding energies...
MFEI: -20.000 AMFE: -0.519
GC content
%: 38.554


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Tdicoccoides_TRIDC1BG025440.5  SwissProt 2021-04-01 F4HW04 3.61e-9


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Tdicoccoides_TRIDC1BG025440.png