GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Tdicoccoides_TRIDC1BG035080 [ TRIDC1BG035080]	1B	386763094	386767296	v1	Triticum dicoccoides (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Tdicoccoides_TRIDC1BG035080.3 TRIDC1BG035080.3	High	No	403	OG0061294		Get ORF Coding potential... Type: noncoding Potential: -0.659 Folding energies... MFEI: -29.454 AMFE: -0.631 GC content %: 46.650
Tdicoccoides_TRIDC1BG035080.4 TRIDC1BG035080.4	High	No	453	OG0061294		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -29.845 AMFE: -0.629 GC content %: 47.461
Tdicoccoides_TRIDC1BG035080.5 TRIDC1BG035080.5	High	No	246	OG0022803		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -25.244 AMFE: -0.559 GC content %: 45.122

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).