Tdicoccoides TRIDC1BG040610
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG040610 [ TRIDC1BG040610] |
1B | 442065884 | 442068681 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG040610.1 TRIDC1BG040610.1 |
High | No | 754 | OG0006464 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -30.889 AMFE: -0.645 GC content %: 47.878 | |
| Tdicoccoides_TRIDC1BG040610.2 TRIDC1BG040610.2 |
High | No | 635 | OG0006464 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -30.772 AMFE: -0.620 GC content %: 49.606 | |
| Tdicoccoides_TRIDC1BG040610.3 TRIDC1BG040610.3 |
High | No | 505 | OG0006464 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -28.891 AMFE: -0.643 GC content %: 44.950 | |
| Tdicoccoides_TRIDC1BG040610.4 TRIDC1BG040610.4 |
High | No | 602 | OG0006464 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -31.561 AMFE: -0.625 GC content %: 50.498 | |
| Tdicoccoides_TRIDC1BG040610.5 TRIDC1BG040610.5 |
High | No | 465 | OG0006464 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -31.032 AMFE: -0.653 GC content %: 47.527 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
