Tdicoccoides TRIDC1BG047440
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG047440 [ TRIDC1BG047440] |
1B | 509049077 | 509061380 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG047440.1 TRIDC1BG047440.1 |
Low | No | 2187 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -32.684 AMFE: -0.656 GC content %: 49.794 | |
| Tdicoccoides_TRIDC1BG047440.10 TRIDC1BG047440.10 |
Low | No | 2129 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.632 Folding energies... MFEI: -32.823 AMFE: -0.662 GC content %: 49.554 | |
| Tdicoccoides_TRIDC1BG047440.11 TRIDC1BG047440.11 |
Low | No | 2109 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.259 Folding energies... MFEI: -28.549 AMFE: -0.670 GC content %: 42.627 | |
| Tdicoccoides_TRIDC1BG047440.13 TRIDC1BG047440.13 |
Low | No | 884 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -26.165 AMFE: -0.637 GC content %: 41.063 | |
| Tdicoccoides_TRIDC1BG047440.14 TRIDC1BG047440.14 |
Low | No | 2687 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -31.693 AMFE: -0.671 GC content %: 47.227 | |
| Tdicoccoides_TRIDC1BG047440.15 TRIDC1BG047440.15 |
Low | No | 2195 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -32.975 AMFE: -0.666 GC content %: 49.476 | |
| Tdicoccoides_TRIDC1BG047440.16 TRIDC1BG047440.16 |
Low | No | 1104 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.633 Folding energies... MFEI: -27.083 AMFE: -0.650 GC content %: 41.667 | |
| Tdicoccoides_TRIDC1BG047440.17 TRIDC1BG047440.17 |
High | No | 610 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -29.393 AMFE: -0.629 GC content %: 46.721 | |
| Tdicoccoides_TRIDC1BG047440.18 TRIDC1BG047440.18 |
High | No | 1289 | OG0061311 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -34.554 AMFE: -0.626 GC content %: 55.159 | |
| Tdicoccoides_TRIDC1BG047440.19 TRIDC1BG047440.19 |
High | No | 539 | OG0061311 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -27.106 AMFE: -0.482 GC content %: 56.215 | |
| Tdicoccoides_TRIDC1BG047440.2 TRIDC1BG047440.2 |
Low | No | 2005 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -32.963 AMFE: -0.664 GC content %: 49.676 | |
| Tdicoccoides_TRIDC1BG047440.3 TRIDC1BG047440.3 |
Low | Yes | 2896 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.524 Folding energies... MFEI: -31.212 AMFE: -0.677 GC content %: 46.133 | |
| Tdicoccoides_TRIDC1BG047440.4 TRIDC1BG047440.4 |
Low | No | 833 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.530 Folding energies... MFEI: -26.951 AMFE: -0.658 GC content %: 40.936 | |
| Tdicoccoides_TRIDC1BG047440.5 TRIDC1BG047440.5 |
Low | No | 2072 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.492 Folding energies... MFEI: -31.940 AMFE: -0.647 GC content %: 49.373 | |
| Tdicoccoides_TRIDC1BG047440.6 TRIDC1BG047440.6 |
Low | No | 1743 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -31.429 AMFE: -0.666 GC content %: 47.160 | |
| Tdicoccoides_TRIDC1BG047440.7 TRIDC1BG047440.7 |
Low | No | 1756 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -34.021 AMFE: -0.654 GC content %: 52.050 | |
| Tdicoccoides_TRIDC1BG047440.8 TRIDC1BG047440.8 |
Low | No | 1807 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -0.501 Folding energies... MFEI: -28.688 AMFE: -0.637 GC content %: 45.047 | |
| Tdicoccoides_TRIDC1BG047440.9 TRIDC1BG047440.9 |
Low | No | 2220 | OG0000737 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -32.892 AMFE: -0.661 GC content %: 49.730 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Tdicoccoides_TRIDC1BG047440.1 | SwissProt | 2021-04-01 | Q67C40 | 6.1e-11 |
| Tdicoccoides_TRIDC1BG047440.6 | SwissProt | 2021-04-01 | Q67C40 | 4.13e-11 |
| Tdicoccoides_TRIDC1BG047440.16 | SwissProt | 2021-04-01 | Q67C40 | 1.34e-11 |
| Tdicoccoides_TRIDC1BG047440.10 | SwissProt | 2021-04-01 | Q67C40 | 5.85e-11 |
| Tdicoccoides_TRIDC1BG047440.7 | SwissProt | 2021-04-01 | Q67C40 | 4.18e-11 |
| Tdicoccoides_TRIDC1BG047440.2 | SwissProt | 2021-04-01 | Q67C40 | 5.3e-11 |
| Tdicoccoides_TRIDC1BG047440.11 | SwissProt | 2021-04-01 | Q67C40 | 5.75e-11 |
| Tdicoccoides_TRIDC1BG047440.8 | SwissProt | 2021-04-01 | Q67C40 | 4.42e-11 |
| Tdicoccoides_TRIDC1BG047440.3 | SwissProt | 2021-04-01 | Q67C40 | 9.24e-11 |
| Tdicoccoides_TRIDC1BG047440.13 | SwissProt | 2021-04-01 | Q5SN53 | 5.02e-12 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
